RNA id: XM_021592055.2


Basic Information

Item Value
RNA id XM_021592055.2
length 4768
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110510856
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14780067 ~ 14834031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCTCAGCTCCAGCTCACAGCAGCCCCCCTTCTGAGATTTTGATATGCCTAAATTCAGAGGATCCTAAACAGATGATTGTCAGTGTGGATTATATCCCCTAGCAGACTGCTACGAGAAATAGAGGAGAACGAGatagagtgtgagtgtgtatgtatgagCTGCTGAAGATACAGGGAAAGAGCTgagcaagtgagagagggagactcGAGCGGAGGGGTGCGAGAGCAGCAACTTCATTGTGTTTAGACAGAACTGCGCGAGAAGCAGGACGGGGCGCAGCTCAGCATCAGTACCGACCGGAAAAAGAGAGAATAGCCTTCTGGATACTACTGTGGACAAACAGACGGTGAGATGTACTTCATTCAAAAACAGTCAGTTGCACCAACTTGAGAGGGAAGAGGAATACATTGATCGAACCGAGGATACATATATGCTGTCATACTGAAAAAGTTCCTAACTATGGAAAATAATTCCTAAATGACTGTTTGTAAAGTTTTCGGACAATACCAGTGCTTTGAGAAGCATACGATTTCAGAGACAGGGACATCGCCCGGTACGTTTGATATACCCAAGCAGTGATATTGCTTTGCACGGCGGTGGAGAATAACCAGCAAGCGGCAGCCCTCACCCCAGTCGCATTGACGGAACAATAGATTCCCGTCATACACTTTCGGGGGAAACACAGCCGAACCGGCGACAGAAGACAATATAAAATGTTGCCGTTATACCTCGTCATTTGCCTTATGGGAACAGCTACCCGAGCAGCCTACTTTTCCCAGCAGCCCCAAGACCAGGTAGTGGTGTCTGGTCAATCGGTGACTCTGCCCTGTGTCATCGTGGGGTACCGAGGAATGGTGCAGTGGACCAAAGACGGCCTGGCGCTGGGTGGAGAAAGAGATCTGCCAGGGTGGACACGCTACTCCTTAATGGGCGACCCGCTATCAGGCGAGCACAGCTTGATGATCGACTCGGCAGAGCTGGCTGATGACGCCATGTACGAGTGTCAGGCTACGCAGGCCGGACTGCGCTCCCACCGAGCCAAGCTCACTGTTCTAGTTCCCCCCACAGAcccggtggtggagggaggtccTATCATACGTGTGAAGGCCCACACACCCTACAACCTCACCTGCCGCGCCTCGGGGGCCAAGCCTGCCGCCGAGATCACCTGGTACAGAGACGGAGAGGTCATGGACACGGCCATATACTCCAAGATGCGGATGGAGGATGGGAAGAGAGAACTGGCTGTCAGTATGCTTCCTGTGGTGCCGGAGGACAAGGACTCTGGCCGTACCTACACCTGTCGCGTCCTCAACCCCGCCGCCCCCGCCGGACTCCAGACCTCTGTCACCATCAACGTCCAGCACCCCCCATCAGTGACCCTGTCCGTCCAGCCTCAGACTGTCATGGAGGGAGCCAAGGTTCTGTTCATCTGCTCTGCCTCTGCCAACCCTGAGATCACAGGatacagGTGGTCCAGGTGGTCCAAGGGAGGAGTCCCCATCTCGGAGGCGAACGGGGACAGCCTGGAGGTGACGGTAGACCACTCGTACTTCACAGACCCTGTCTCCTGTGAGGTGTCCAACTCAGTGGGCAGCACCAACGTCAGCACCCTGGTGGATGTACAATTTGGTCCCAGGCTGCTGTCGGAGCCCAAGCCCATGAACGTGGACATTGGGATGGACGCTGCCTTCACCTGCACCTGGACAGGCAACCCTCCCCTTACCCTGGCCTGGACCAAACAGGGCTCAAGCGTGgTGCTCAGTAATGGCAACACCCTGCAGCTGAAGGCTGTCACCCAGGAGGATGCTGGGACGTATACCTGCAAGGCCATCGTCCCCCGCATCGGGGTGGCTGAGAGGGACGTCACGCTCACTGTCAACGgcccacctATCATTACAGCAGACGCCACACAGCACGCTGTCAAGCACTCCAAGGGCAAGCTAGAGTGCCTGGTGGGAAACAGCCCCTCGCCTGACAAGATTGTGTGGACATTTGGAGACGTGACCCTCTCCTCGGGCTCCTCCGGTCGTTTCTCTGTCCAGACGGTGACCAGTGACCATGGGGTCCTGTCCTCCCTGGTCCTGTCTGAGACCCTGGCCCAGGACTTCCTACTCCGCTACAACTGCACCGCATGGAACCGCTTTGGCACAGGCACTGCGCTGGTCACCCTCAAGGAGCAAGagGCCCTGCCCATGCTGATCATCATTGGGGCGGCGGTGGGCGGAGGGTGTGTCCTGCTCATCTGTGTCGTCaccctggtctctctctgctgcaggcaCACCGGGAAAGGTGAGGTCGAAGGTAAAAAGTGCACACGCCTCTCAAAGAGTGACATCAGAGTTCAGATTGTGCACAGTGACCACAATGCTACCCGTGGCaacgatgatgaggaggatgtCAAGGAGCCCATGGTAAATGCCTCCGTTCAATCACTTTCAGGCCTGTTGTTTCCCCCTCAGGCCCCCAACAGCAGTGAGTCTCCTGGGACATCCCGGACGGAACACAGTGACCTGCtggaggaggacgaggacgagAGGTCAGACATCAAGGTAAAAACCGACCCCACTAACGGCTACTACAACGTGCATGCTCACGAGGACCGGGTGATCCGCAGTGGTTTCTCAGATTACGTGCCCAACCCCCGTCCTGTCTACACGCCATCCCAGCTGCCCTCCCCCAGCCCGCTGTACGGCCAGCACACAGTGGTGGCAGCCACACAGCCCCGCATCTACGACTTCTCCCACCGCTACGCCACCACCACAGGGGCCCGCTCCACCTACGAGCAGCAGCAGGCAGCGGCAGCCCAGCCCGGAGCCATCTACCCCACCGACCCTGTCTACAGTGGCTCTGCCTACCTGCCCACCGCCACCACATACGGCCGAGCCTTCACCAGCTACGTCAAGCCTGCCTCCTACGAGAAGGTGGACGCCTACGATCAATCAGACCAGGCTAGCAAGGTGTCTAGCTCCTCTCGTTTCTCCTATGCATCATCGCAGGTCTCCTCCCAGCAGTCCGACTACGGAAGGCCGTCACAACGCATGCAGACTCACGTCTGATTTGACCACGGAACAGGGGGTGGAGCGCGAAGGGCCATGTAAAGAGGAAGCATTTGTCATCTCTATAGGAGGTGTGGCCAGACTAAcatgaggagagaggactggttgGTTGGTCCTTCTCCTGGACACATTTTGGAAGGAGATGTAGGTGACAGTGATTGCCTTCCTTATTTGTTATTCAGTTGTCATTCTGGGATTGAATGGTCCCAATGGAGTCAATGATTGTGATGTGCCACTCACATTCCCCATCAATAAATAATCTACTACAGTGTCTGCTACTTCAAAGATGAGCCTGCTATTCTGTCATGGCACTGGTTTTGTTTTACcagtgaggggatgggaggaaGGCAAACTGGAAATCACCAGACAGGAGCATCTCATGACTTTGGGTGGCCTAAACTAACTGGATTTTGGAGCCTAGCTAACATTTCTCAAAAAGAACAGACTCCTCAGACAAATAGAACTTGTAACTGACTATGAACAAATTAAAAACACAGAtatattcataaaaaataaaagaagAGTCAACACATTGTGGTCATTTGGTGTTTGTCGGCATGTGAAAGGAGTTCTAAGCACATTTGTGTCTCTCTATCCATTTAAAGAAGCCTGAGCTCCACAATGGCAGCCATAAACCGCTCTGCAAAACAATACGTTTGGCTTGGGTGTGGGTTATCTGGGAGTGAAAGCAGAGTGAGGTATGGAGAGAATGTGTATCCTAGCCTTCACCTAATAGAGAGACAGCCTCTGTGTTATTGTTCTACCCTGGAGGACAAGAAAAGGAAATGGAAAAACCCAAAGATGGTGAGCTACAGTACATAGCAGTGTTTTGAAAGAGTTAGGGAGATGAATTCCTCTGGGTACTGTATTACTTCTGTGTTTGCCAGATTGTTCTGGAAATAGTCTCCATTTAACAATCAGAGAATGCGGTTTGTAAAATGGTGGCAATCTTGAACTTGAATAAGCTCAAGGTGCAGTCTCAACAGGCTAAGATGGGTTCTACTTGTGAAACTGTCCCTCTTCAGACACCATCCACACACCAGTCTTTATGACACAATCAAGTAGCTTCAATATGTTTACAAAAACACAGTACTACCCTGAAATACTGACTAGATCAACTGTACAAATGGGTGAAGAAGTCCCATTCTTTCTCTGTTGCATGCAGATGATGTGTCTAGTGAAACTCTTCAGCATTTCTTTTCCATGTCCATTATGCTTGTTTGAGAGACTGCTTACTGCACCTGGTCTCAGTTGCATTCCGGTTCTGGACACTACTGGAACCCTGTACTGCCATTTTGTGTCGAGAGCCGCGCTACCGGTCAGTCGGCCCAATTGGAGAACAAACGTCACTAAGTGAACCAagtgatttaaaaacaaaaatcATCGCTCGTCTTTATTTTTATATAAGCCTTAATGTACAGCTTGTAAGCTGCTTTACTGTAAAGTAtctttatattatatatacataaaTCTAtcttgattgattttatttgggTCCACaatttctctccttctgttccgTTGTTCATCAATCACTGAATGCAGAAAGATGAACTATGCTTTTTGGGAACACAACTAATTACCATTTGTTGGTTTGGttcattttgtttttttaataatgTATTAAGGATTTTATTTGCTAAAAATGAGCTATTGTTGCTTGTAACTTTGTatacatatttatatttaaataaAACCATTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259902 lncRNA downstream 65234 14714273 ~ 14714833 (-) True G227207
TU259834 lncRNA downstream 141753 14598789 ~ 14638314 (-) True LOC110503689
TU259830 lncRNA downstream 142649 14598789 ~ 14637418 (-) False LOC110503689
TU260033 lncRNA upstream 60219 14894249 ~ 14894545 (-) True G227331
TU260042 lncRNA upstream 65804 14899834 ~ 14900139 (-) True G227340
TU260199 lncRNA upstream 156433 14990463 ~ 14991406 (-) True G227472
TU260203 lncRNA upstream 163187 14997217 ~ 14998401 (-) True G227476
TU260162 lncRNA upstream 170257 15004287 ~ 15017987 (-) False G227438
XM_021591846.2 mRNA downstream 37168 14694606 ~ 14742899 (-) False aplp1
XM_021591853.2 mRNA downstream 37168 14694606 ~ 14742899 (-) True aplp1
XM_021591890.2 mRNA downstream 112567 14655864 ~ 14667500 (-) True zbtb32
XM_021591970.2 mRNA downstream 137158 14639769 ~ 14642909 (-) True LOC110510719
LOC110503689 mRNA downstream 172299 14600902 ~ 14607768 (-) False LOC110503689
XM_036969961.1 mRNA upstream 189495 15023525 ~ 15035282 (-) False si:dkey-262k9.2
XM_036969956.1 mRNA upstream 189495 15023525 ~ 15035963 (-) False si:dkey-262k9.2
XM_036969951.1 mRNA upstream 189495 15023525 ~ 15038162 (-) False si:dkey-262k9.2
XM_036969943.1 mRNA upstream 189495 15023525 ~ 15040893 (-) True si:dkey-262k9.2
XM_036970146.1 mRNA upstream 268323 15102353 ~ 15109931 (-) True LOC118936618
TU259832 other downstream 143357 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 255213 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 255213 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 304901 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 778259 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 702335 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 766985 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 872204 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 953592 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 2005359 16839389 ~ 16839839 (-) True G229373

Expression Profile