RNA id: LOC118944476


Basic Information

Item Value
RNA id LOC118944476
length 1551
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC118944476
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14942150 ~ 14984145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTGTCCTGTGGATCAGAATGGGGAGGTGATTTCCACCAGCTGGGAGGTGGACACAGAGTCGCGACGGGCCATCAGCCACCTGACCCTGCAGGTTAAACCACAGGACAACCAGGCCGAGCTGCACTGTGAAAGTGTCAACCAGGTGACCCCTGTCCCTCTGTCCGACAGCCTCAAGATCACTGTCCTCTTTGAGCCAAAGAAGGTGATGGTGCTGGGGTCGTTCGAggcaagagagggggaggaggtgaccCTGTGCTGTTAAACCTATACCAGTAACCCACCTGTACACATCCGCTGGTGGCTGGGCTTCAGGGAACTCAACACCACCGTGGTAAATGTGGAAGAGGGAGACCACGGGGGGAAGACAACCATGTCTAACCCATGTTGTCTCTCGGGAGGAGAACGGGCTGCCCCTCACCTGTGAGACCTTCAGCAATGGCACACGCTTCTCCAAGAGCCAGTCCAACAACCTCATTGTTTTCTACCCTCCTCAGAAGGTGTGGATAGAAGCCCCTCCCCCAGGGGTTCCTCTGAGCTCAGGGACCATCATACGCCTCATCTGCTTCTCTAGTGGGGGAAGCCCCAAAGGAACCATTAACTGtCCCTGCAGTGAGTGTGACAATCGAAGCCAAGCAGAAAGAGCTGCGTCGGGGCCAAAACCTCAGCCTGGACTGCCTGTCTGGGAGCAGCAACCCCCAGGCCAACATCTCCTGGAGCCTGGGcccaaccagGCTCTTAGGAACACAATGTTTGGTGATGTGTCAGTAAGCAGTACTCTgtccctccccctgtcctcccagCACCAAGGCCAGAGGATCACCTGTCAGGCCTACAGCTCTCTGCTGTCTGAGGGAGTCAACACCTTCTTCAAGTGTAATTGTACTTTCATATTGTTTCTCTCGTCCTACTTTCTAATTGTCTACTCCCCAGATGCCCCTAGTGTGAAGATGGAGAATGACCCAGTGTATGTGCACGTGGGGGAGACAGCAGACCTGTTTTGTGTAGGAGATGCAAACCCCATCATCAACACTGACATGTTTTCCTGGAAATGGCTGggtgagggggagatggaggagatgggggagcAGATCCAGGATGAGGCCACTGGGCAGCTGACCATCCAAGGGGCGACTCAGGTCAACGCCGGTCGCTACCAGTGCACTGCCAACAACAACATAGCGCCCCCTGCCAGCGTGGCAGTCCAGCTGGTGGTGCGCTGTGTGTCTAACGAGCTCTACCAAGATCTGTCAATCATGTCGTGTGAATACATCATGGGTGCAACGGAGTGGAAAAGCGTTGTATATTTTAAGCCGGAGCTCCAGAAGGGGGCTCAGTGGAATAAGGTGGCGAGCAGAGGGGATAGCACCAGAACAGCAGAGGTGGTGTGCCAGGGAGAGGGCATCCCTCAGCTCCACTTCTCCTGGGCTTCTCCTGCCTGCCCTATAGccatattgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtactggcagctcttggctgactgacagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260082 lncRNA upstream 15359 14927508 ~ 14927748 (+) True G227369
TU260056 lncRNA upstream 26806 14916052 ~ 14916301 (+) True G227354
TU260035 lncRNA upstream 46786 14896033 ~ 14896321 (+) True G227333
TU260025 lncRNA upstream 53362 14889378 ~ 14889745 (+) True G227323
TU259551 lncRNA upstream 195142 14694616 ~ 14747965 (+) False G226902
TU260218 lncRNA downstream 59518 15043663 ~ 15043953 (+) True G227489
TU260221 lncRNA downstream 60802 15044947 ~ 15045254 (+) True G227492
TU260287 lncRNA downstream 112580 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA downstream 112580 15096725 ~ 15102227 (+) True LOC110511142
TU260289 lncRNA downstream 131882 15116027 ~ 15120024 (+) True tyrobp
XR_005041154.1 mRNA upstream 1235 14919599 ~ 14941872 (+) True LOC110510982
XM_021591836.2 mRNA upstream 165954 14743721 ~ 14777153 (+) False LOC110510471
XM_036975396.1 mRNA upstream 165954 14744967 ~ 14777153 (+) True LOC110510471
XM_021582164.1 mRNA upstream 311945 14628884 ~ 14631162 (+) True LOC110503699
XM_036975381.1 mRNA upstream 341498 14525705 ~ 14601609 (+) False LOC110510370
XM_036969876.1 mRNA downstream 626 14984771 ~ 14991394 (+) False LOC110510950
XM_036969882.1 mRNA downstream 753 14984898 ~ 14991394 (+) False LOC110510950
XM_036969904.1 mRNA downstream 753 14984898 ~ 14991394 (+) False LOC110510950
XM_036969899.1 mRNA downstream 2367 14986512 ~ 14991394 (+) False LOC110510950
XM_036969890.1 mRNA downstream 3975 14988120 ~ 14991394 (+) False LOC110510950
TU259593 other upstream 239132 14703601 ~ 14703975 (+) True G226941
TU259410 other upstream 533026 14408872 ~ 14410081 (+) True G226791
TU259427 other upstream 552679 14389477 ~ 14390428 (+) True G226807
TU259324 other upstream 663252 14278432 ~ 14279855 (+) False LOC110510822
TU258443 other upstream 896259 14046586 ~ 14046848 (+) True G225920
TU260067 other downstream 6375 14990520 ~ 14991294 (+) True LOC110510950
TU260122 other downstream 13014 14997159 ~ 14998075 (+) False G227405
TU260123 other downstream 13014 14997159 ~ 14998075 (+) True G227405
TU260267 other downstream 88999 15073144 ~ 15095913 (+) True LOC110511049
TU260351 other downstream 259801 15243946 ~ 15244282 (+) True G227606

Expression Profile