RNA id: TU260071


Basic Information

Item Value
RNA id TU260071
length 1822
RNA type TUCP
GC content 0.42
exon number 7
gene id LOC118944476
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14942150 ~ 14984145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctacaccataTTAAACAACATCTTTCCACAGTAAGACCTAATGTAGTCCTTACTCAGCACGCCAGCCCATCAAAGCCTGGAGCACCGTGTCCGTTTTCAGTCAGACAGATTGTTAGTGAGGTAGCAATTTGTCACGCCGGCCCAGGGTCCACATACAGCCGCCTGCACTGCCTGCGTACCCAAACTCATTGCAGCAATAACAAAGGCTGGCCCTCCCCTAATTTATTTTACGCTGTATATTTTATTCAGGGAGGCTGTAATTTATTCATATTTCCAAACGTTACTTTATTACTGTTTAAACATCTGTTATTTTGCTTTATGGAGTCGATCTAGCTGGCTGCTCCCTTAATACTTAATGCTTTCATCAGAGCTAGAGCCCTTACTCTGCAGTCAGGATAAATGTTGCCAATTTATTGGCCCTGTCTCAACAAATAGAAAGGATGCTCCCTTGCTCATAAAGCCAAGTGTCCGCTCATCCCAGTGCATATTTCTcaccctctctattctctctttctgtcatcttCTCTGTTTCTGGtgcttcatctctccctctctctttctattgctgcctctcttcctctctcctcactttctGCCGTTCTTTCCCAAGATGttacttcatctctctctttccctctcaacaTCAGTCCCACCCCAGCATCCAGTAATCCAGGGTCTGGACAGAGAAGGCCCGGTGAAGAGGGGGACCATGTTGAAGCTGGTTTGTGTGTCCCAGGGAGGGAACCCACTGGCCACCCTACACTGGACCAAGATTCAGAGACTACACTCGGCTAAAGCTTAGAATCAGTAGTTcttggtgttttctccatcttctagttctttactctctctttcagaACTCACTCCCTTCCTActgcagccagtcagtcacctaTTATGTTAGTGAATAACCCATAGCCCTGTCCTGTCTGCTTTTTACTAACTCATAATTCTGTCCTGTGGATCAGAATGGGGAGGTGATTTCCACCAGCTGGGAGGTGGACACAGAGTCGCGACGGGCCATCAGCCACCTGACCCTGCAGGTTAAACCACAGGACAACCAGGCCGAGCTGCACTGTGAAAGTGTCAACCAGGTGACCCCTGTCCCTCTGTCCGACAGCCTCAAGATCACTGTCCTCTTTGAGCCAAAGAAGGTGATGGTGCTGGGGTCGTTCGAggcaagagagggggaggaggtgaccCTGTGCTGTTAAACCTATACCAGTAACCCACCTGTACACATCCGCTGGTGGCTGGGCTTCAGGGAACTCAACACCACCGTGGTAAATGTGGAAGAGgtcgcagttgtacatGTAACGGTCGTCTGAtgaggaaggatcggaccaaagcgcagcgtgGGAGACCACGGGGGGAAGACAACCATGTCTAACCCATGTTGTCTCTCGGGAGGAGAACGGGCTGCCCCTCACCTGTGAGACCTTCAGCAATGGCACACGCTTCTCCAAGAGCCAGTCCAACAACCTCATTGTTTTCTACCCTCCTCAGAAGGTGTGGATAGAAGCCCCTCCCCCAGGGGTTCCTCTGAGCTCAGGGACCATCATACGCCTCATCTGCTTCTCTAGTGGGGGAAGCCCCAAAGGAACCATTAACTGtCCCTGCAGTGAGTGTGACAATCGAAGCCAAGCAGAAAGAGCTGCGTCGGGGCCAAAACCTCAGCCTGGACTGCCTGTCTGGGAGCAGCAACCCCCAGGCCAACATCTCCTGGAGCCTGGGcccaaccagCACCAAGGCCAGAGGATCACCTGTCAGGCCTACAGCTCTCTGCTGTCTGAGGGAGTCAACACCTTCTTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260082 lncRNA upstream 14402 14927508 ~ 14927748 (+) True G227369
TU260056 lncRNA upstream 25849 14916052 ~ 14916301 (+) True G227354
TU260035 lncRNA upstream 45829 14896033 ~ 14896321 (+) True G227333
TU260025 lncRNA upstream 52405 14889378 ~ 14889745 (+) True G227323
TU259551 lncRNA upstream 194185 14694616 ~ 14747965 (+) False G226902
TU260074 lncRNA downstream 615 14975592 ~ 14983055 (+) True LOC118944476
TU260218 lncRNA downstream 68686 15043663 ~ 15043953 (+) True G227489
TU260221 lncRNA downstream 69970 15044947 ~ 15045254 (+) True G227492
TU260287 lncRNA downstream 121748 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA downstream 121748 15096725 ~ 15102227 (+) True LOC110511142
XR_005041154.1 mRNA upstream 278 14919599 ~ 14941872 (+) True LOC110510982
XM_021591836.2 mRNA upstream 164997 14743721 ~ 14777153 (+) False LOC110510471
XM_036975396.1 mRNA upstream 164997 14744967 ~ 14777153 (+) True LOC110510471
XM_021582164.1 mRNA upstream 310988 14628884 ~ 14631162 (+) True LOC110503699
XM_036975379.1 mRNA upstream 340541 14525705 ~ 14601609 (+) False LOC110510370
XM_036969876.1 mRNA downstream 9794 14984771 ~ 14991394 (+) False LOC110510950
XM_036969882.1 mRNA downstream 9921 14984898 ~ 14991394 (+) False LOC110510950
XM_036969904.1 mRNA downstream 9921 14984898 ~ 14991394 (+) False LOC110510950
XM_036969899.1 mRNA downstream 11535 14986512 ~ 14991394 (+) False LOC110510950
XM_036969890.1 mRNA downstream 13143 14988120 ~ 14991394 (+) False LOC110510950
TU259593 other upstream 238175 14703601 ~ 14703975 (+) True G226941
TU259410 other upstream 532069 14408872 ~ 14410081 (+) True G226791
TU259427 other upstream 551722 14389477 ~ 14390428 (+) True G226807
TU259324 other upstream 662295 14278432 ~ 14279855 (+) False LOC110510822
TU258443 other upstream 895302 14046586 ~ 14046848 (+) True G225920
TU260067 other downstream 15543 14990520 ~ 14991294 (+) True LOC110510950
TU260122 other downstream 22182 14997159 ~ 14998075 (+) False G227405
TU260123 other downstream 22182 14997159 ~ 14998075 (+) True G227405
TU260267 other downstream 98167 15073144 ~ 15095913 (+) True LOC110511049
TU260351 other downstream 268969 15243946 ~ 15244282 (+) True G227606

Expression Profile