RNA id: TCONS_00028747


Basic Information

Item Value
RNA id TCONS_00028747
length 568
lncRNA type retained_intron
GC content 0.52
exon number 2
gene id XLOC_014525
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7249041 ~ 7274844 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTCATGGAAGAAGGAATGTTGCTGGAGGACTttgaatgtgtgcgtgtgtgtgaatgaatgtgttgaaAACTAACCAGGAACTACATGTATCTGTATATCTCTGTGTCTCTCTACATCTGTTTCCATCTTTACCGCTTTACCCATTCATCCCCCTCCCCTTTCACGTTCTTTTTTCCCCCGTTATGTTGGTCTTTCTCACACTATCCTGCACTCTGCCCTTCATCTTCGTTTCCCCGTCTTGTTCCTCTTCCTCATTTCCCTGTGTGCGATGCAGCCGTTCAGGAGGAGCGTCAGAGAAACAAAGAGCGCGATGGAGAGGTGGAGTCCTCCAGCGCTGCCAATGAGGAGATGCCCGTGGAGAAGATTCTGGAGGCAGAGATGGCTGTAGAGCAGAAGACTGAGCTGCATGCTGATGGCAGCTCAGGGGGAAGCTCTCCGAACGACCCGGTCACAAACATCTGCCAGGCCGCTGAtaaacagctgttcactttggtGGAGTGGGCCAAACGGATCCCTCACTTCAGTGAGCTCTCTCTGGACGACCAGGTCATCCTGCTGCGTGCCGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0032526 response to retinoic acid biological_process
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0044323 retinoic acid-responsive element binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-436 Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including blastoderm; digestive system; eye; gonad; and tail bud. Orthologous to human RXRB (retinoid X receptor beta).

Ensembl:

ensembl_id ENSDART00000131527

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030150 lncRNA downstream 342766 6900956 ~ 6915573 (-) True XLOC_014517
TCONS_00030149 lncRNA downstream 357003 6892715 ~ 6901336 (-) True XLOC_014516
TCONS_00029754 lncRNA downstream 428522 6801438 ~ 6829817 (-) True XLOC_014513
TCONS_00029753 lncRNA downstream 661722 6592036 ~ 6596617 (-) True XLOC_014511
TCONS_00029752 lncRNA downstream 1275017 5968523 ~ 5983322 (-) True XLOC_014505
TCONS_00028753 lncRNA upstream 15141 7276060 ~ 7283550 (-) False XLOC_014526
TCONS_00028754 lncRNA upstream 26611 7287530 ~ 7291703 (-) True XLOC_014526
TCONS_00028764 lncRNA upstream 240151 7501070 ~ 7501739 (-) True XLOC_014533
TCONS_00030151 lncRNA upstream 252199 7513118 ~ 7513678 (-) True XLOC_014534
TCONS_00028767 lncRNA upstream 299001 7559920 ~ 7575188 (-) False XLOC_014537
TCONS_00028743 mRNA downstream 17712 7237188 ~ 7240627 (-) True XLOC_014524
TCONS_00028742 mRNA downstream 33133 7205896 ~ 7225206 (-) True XLOC_014523
TCONS_00028739 mRNA downstream 33149 7179740 ~ 7225190 (-) False XLOC_014523
TCONS_00028740 mRNA downstream 33232 7180402 ~ 7225107 (-) False XLOC_014523
TCONS_00028741 mRNA downstream 33279 7181288 ~ 7225060 (-) False XLOC_014523
TCONS_00028749 mRNA upstream 4457 7265376 ~ 7274844 (-) False XLOC_014525
TCONS_00028750 mRNA upstream 7046 7267965 ~ 7272921 (-) True XLOC_014525
TCONS_00028752 mRNA upstream 15141 7276060 ~ 7291733 (-) False XLOC_014526
TCONS_00028755 mRNA upstream 48131 7309050 ~ 7358184 (-) False XLOC_014527
TCONS_00028756 mRNA upstream 48131 7309050 ~ 7406933 (-) False XLOC_014527
TCONS_00028719 other downstream 1019350 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 1415134 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028706 other downstream 1484304 5773921 ~ 5774035 (-) True XLOC_014501
TCONS_00028700 other downstream 1842424 5415799 ~ 5415915 (-) True XLOC_014495
TCONS_00028699 other downstream 1877632 5379593 ~ 5380707 (-) True XLOC_014494
TCONS_00028751 other upstream 15141 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028762 other upstream 207282 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028774 other upstream 564476 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028791 other upstream 1591621 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 2751579 10012498 ~ 10012614 (-) True XLOC_014580

Expression Profile

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