RNA id: TU260074


Basic Information

Item Value
RNA id TU260074
length 2331
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC118944476
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14942150 ~ 14984145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTcgttctctccctacctctcaccCTGCCTCCTGTGTGAATTCAGTCTTTTTTTGATATTGGTGGACGCCGCTTCTCtacaggtttttattttatttgcactGCTGTCGCCTTTCATGGCTGACATGGTTTCTTCGTGTCTGGGTTTGTGTGTTTTtctccctttgtgtgtgtgtgtgtgtgtcagatcccCCAGAGTTCAGCCCTGACCATCCCCAGAAGATACAGGTAGTGGAGGATGAGACAGCCATTCTTCCCTTGCCAACATCTCCTGCAGTTGGCTCTACCGCAAGGAGGAGCTGCACAAAGACGTAGTTTCCTCAGGGTGCCCGCACATCAGCCTCGCTTCTTTTCCGTGTCTCGTGGATCAGGGCCCGGTCCAAGGTGAGCACTATGTCCTGCGCCTACGAatcgttgaagtagaaatcttcatccaaatTGAGGTTAGTGATCACTGGACTGATGGAAACATTCTGTACAAATGACGTAAATGTGGGTCGCTATTTTTCTGAATACATCACAGCCGTTCCTCTCCTGGTCTACCCTCTATTCCCTGTCATCGGGCCACAGCCACCACACTCCTGTCCCTAACCTCCCACCTCAACCTCCACCACCGCACCATCCTCCCAGAGGGGTTACCCAGCCATTAAAGGAGAGATGTTGCGGTACAGTGGTGGTCTGGGCTATTGTTTCTGTGGGAATATTGCCAGGCCAATCAATAATCTAAGCATTAGATGTCACGTATAAGCCATGAGTGgcttaggggtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgaacaGAAATGCATCCTCGGTACCACTTTACTGAGAGCACAGAGTTTGAGATCTGGAATGTGACAAGGCGAGACACCGGGGTCTACACTGTGAACTGTACCAACGAGGTGGGGTTTGACAATACCATCATCACTCTGGACGTACAGTGTAAGTCTGACCCACTGGCGTTGAATCTGGTTTGTCTACTCACCTCAacactgtgttagcccactgagctcaAGTCTAGGCATTAGCTCAGGGACTGAACACAAGTCTTCAGGACTTGGGCAAGGTTTCTCAGTCCTCACGCAAGTGTGGTTCATCAAGCCACTTACATTACATGCCAGTGTTGTACACCCAATACAACCCCAATCCTGTCACAACCTTGAACCAACCGACCGACACATCTCCATCCCACTGCCTCCACTCTTAATGATGTAATAATAGCAGGTCTGAATGTTCCAGTAAAACCTACAGTGCAGAATGAGCCTAATGGACAGACAGCACAGCGCTGTCCTGATCCGATGGAACCTGACAGTTGAAGGTATCCATAATGTATAGAGGATTGTAATAGCTTTTATGGGTGGCACTGTAGCCCACTTAACAATGTTGTTCCTGGTTGAAATTAATGTGGTATGTGAGAAGGCCGTAAGTGTCACTGGTGATTCCATCAGTGTGCTGTGTGTATGAACACAGACGGGGGCGTTGGGACACTAATGCCACTACTGTTATAAGTAGATGGTACCCACAGGAAGAGAAGAGCACACAGCCAGGTGGAAAGGGATTACACTACAGTATGTTGATGGAGTCATAGTGCTGCTGTATCCAGGACATAGTGACTGACTGAAGGAGCGATGGAATGAGGGAAAGTGGGCCATGATGACTGCACCCTCCCTGCCTATGTCTCGCTCAAAGTTAAGGTAGGGGACAGGCAGCATGCAATGAAGAACCTCCAGCGTGACGTGGCCCAATTTACGGACACTGAATTGGGCAGGGGTGTTTGACAGTAGGGGGTTGGGACAGATCCAAAATATACTGGGGTTAAATTGATTGGCAAATATTTAATGTAAAGTGGTCAGAAAGGTAATtagttacagtatgtatagggTGTCTGTAGGATCAGTGAtgcatagaatagaatagaatagagtggaatataatacaatataatggaatagattagaatgGAATAAAATACAATATAATTAATATATTTGCAGAGAGAGTTGGGAGTTGGTGGGTGGTGAGTGACTGATTGTTCCCTAAGTTCCAAAGTAGAATTGTACTTTCATATTGTTTCTCTCGTCCTACTTTCTAATTGTCTACTCCCCAGATGCCCCTAGTGTGAAGATGGAGAATGACCCAGTGTATGTGCACGTGGGGGAGACAGCAGACCTGTTTTGTGTAGGAGATGCAAACCCCATCATCAACACTGACATGTTTTCCTGGAAATGGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260073 lncRNA upstream 4305 14967957 ~ 14971287 (+) False LOC118944476
TU260082 lncRNA upstream 47844 14927508 ~ 14927748 (+) True G227369
TU260056 lncRNA upstream 59291 14916052 ~ 14916301 (+) True G227354
TU260035 lncRNA upstream 79271 14896033 ~ 14896321 (+) True G227333
TU260025 lncRNA upstream 85847 14889378 ~ 14889745 (+) True G227323
TU260218 lncRNA downstream 60608 15043663 ~ 15043953 (+) True G227489
TU260221 lncRNA downstream 61892 15044947 ~ 15045254 (+) True G227492
TU260287 lncRNA downstream 113670 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA downstream 113670 15096725 ~ 15102227 (+) True LOC110511142
TU260289 lncRNA downstream 132972 15116027 ~ 15120024 (+) True tyrobp
XR_005041154.1 mRNA upstream 33720 14919599 ~ 14941872 (+) True LOC110510982
XM_021591836.2 mRNA upstream 198439 14743721 ~ 14777153 (+) False LOC110510471
XM_036975396.1 mRNA upstream 198439 14744967 ~ 14777153 (+) True LOC110510471
XM_021582164.1 mRNA upstream 344430 14628884 ~ 14631162 (+) True LOC110503699
XM_021591744.2 mRNA upstream 373983 14525706 ~ 14601609 (+) True LOC110510370
XM_036969876.1 mRNA downstream 1716 14984771 ~ 14991394 (+) False LOC110510950
XM_036969882.1 mRNA downstream 1843 14984898 ~ 14991394 (+) False LOC110510950
XM_036969904.1 mRNA downstream 1843 14984898 ~ 14991394 (+) False LOC110510950
XM_036969899.1 mRNA downstream 3457 14986512 ~ 14991394 (+) False LOC110510950
XM_036969890.1 mRNA downstream 5065 14988120 ~ 14991394 (+) False LOC110510950
TU260071 other upstream 615 14942150 ~ 14974977 (+) False LOC118944476
TU259593 other upstream 271617 14703601 ~ 14703975 (+) True G226941
TU259410 other upstream 565511 14408872 ~ 14410081 (+) True G226791
TU259427 other upstream 585164 14389477 ~ 14390428 (+) True G226807
TU259324 other upstream 695737 14278432 ~ 14279855 (+) False LOC110510822
TU260067 other downstream 7465 14990520 ~ 14991294 (+) True LOC110510950
TU260122 other downstream 14104 14997159 ~ 14998075 (+) False G227405
TU260123 other downstream 14104 14997159 ~ 14998075 (+) True G227405
TU260267 other downstream 90089 15073144 ~ 15095913 (+) True LOC110511049
TU260351 other downstream 260891 15243946 ~ 15244282 (+) True G227606

Expression Profile