RNA id: XM_036969904.1


Basic Information

Item Value
RNA id XM_036969904.1
length 1639
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110510950
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14984771 ~ 14991394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacatttttggggctgcctctcgggcttccagccacaccgccgtgctagctcctcataatgccatctctCTGCTTtcactgcctccagctctgctttggggagGCAATTTTCTCCTGGCTGTTCGCAGGGTCCTTTACCGTtcaaaatctcctcccaagtccatttctccaaatatcgctgcctctcctgctgctgctgctgctgcctgttaccacgctgcttggtcctcggttggtgggtgtttctgtagcGGCTGTCTTGGGTAGAAGAAgcagaggaccaaagcgcagcgtgatcaaCCAGATCCTCCCTCAGAGATCTGCCTGGTCAGCTTCACCCATGCCTCTGCAACTCTAGAATGGATCCCAGGCTTCGATGGGGGATTGGAGCAGAGATTCCATATCAGGTTAGAGTCCATCCATGTACTGACTAAGATGCTGTTGATTGACAGCTACCATTGGGAGCAAACATCTTCATTGTGACAGGCCTGTCCCCCGCCACTACATACAACTTTTCTATCAACGCACTCAACTCCATGGGAGAGAGCGGCTATGCAGACAACAACTCAGTACACACCATCACCAGCGAGGAGTGGGAAGGAGCAATCCAGGAAGAAGATCCCTTTGGGGAGGACACGAGAGGGTTGTCGCTGTATCAGACTGTGATCATGGCGGTGGTTGGTGGggctctgctgctggctctcaaCTGGCTGGGCTGCTTTCTGTGTCTGAGGTGGAAGAAGAGGCGTGGCCAGACAGaGAGTAAAGGCAGTGTTTCAGATGGGAAGAAGAGTGAAGGTAATGGGTTCACTGTGTTCACTGCCAGCGGCTCCACCAGGTACGAGGTCAGAGGGCTGGTGAACCCTGCGGGTTCATCGACAGCGGGTCAGAACCAGACAGCAGCGTATATGGGTGCTATGCTGGGGAGAGCtcccactactactaccccaCCAGTGACTActgcccctctctctacccccaccccgagGGAGCACAAGGGCAAGATGGCCGCCACTACCCACTGGAGGCCATAGGCCATGAGTATGAGGAGGTGAGAGACTGGGGCATGTATCAGGACATGCTGTATCAGGACATGCTGGGGTtgtctctcccactgtctccttCCCAGTTTGACCCCTGGTTACCAGAGCAGAGGCGAGAGTGGAGACCACCCCCACCCAGTTACCCTCAGGGAAGTGGGAGGGACATGATTGCCCTGCAGCAGCCAATCAGAAGGAAGAATCCGGTGGATGAGCGATGCCCAGAGAGAAGCGACTATGATTTACCTTTTGAGCTCAGAGGACAGTTAGTTTAGGAAGCTTAGGCCTTGATTCCAGACTGTGGACAATACCTCAGACTCAAATACAACCTCTTAGTGCTGTGTTGGTATTGAGTACAATATGAATAGGAAGCCTTCCAACTGTTACTACCAAAaggtacagtatttacagtaggtGATATTGTGGGACAGTCAATCAATACAAATTAGGCCTACCATCGATCCAAAGACCTCAAAGATATAAAATGTAAAAGATGAAGCAACTAAACATGCAGAGTTTTTCGTACATATTTTCTAGTAACAGTTGattatactctactgtacaaATAAAATGGATAATCTAGGCCTAGGCCCAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260074 lncRNA upstream 1843 14975592 ~ 14983055 (+) True LOC118944476
TU260073 lncRNA upstream 13611 14967957 ~ 14971287 (+) False LOC118944476
TU260082 lncRNA upstream 57150 14927508 ~ 14927748 (+) True G227369
TU260056 lncRNA upstream 68597 14916052 ~ 14916301 (+) True G227354
TU260035 lncRNA upstream 88577 14896033 ~ 14896321 (+) True G227333
TU260218 lncRNA downstream 52269 15043663 ~ 15043953 (+) True G227489
TU260221 lncRNA downstream 53553 15044947 ~ 15045254 (+) True G227492
TU260287 lncRNA downstream 105331 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA downstream 105331 15096725 ~ 15102227 (+) True LOC110511142
TU260289 lncRNA downstream 124633 15116027 ~ 15120024 (+) True tyrobp
LOC118944476 mRNA upstream 753 14943107 ~ 14984145 (+) False LOC118944476
XR_005041154.1 mRNA upstream 43026 14919599 ~ 14941872 (+) True LOC110510982
XM_021591836.2 mRNA upstream 207745 14743721 ~ 14777153 (+) False LOC110510471
XM_036975396.1 mRNA upstream 207745 14744967 ~ 14777153 (+) True LOC110510471
XM_021582164.1 mRNA upstream 353736 14628884 ~ 14631162 (+) True LOC110503699
XM_021592115.2 mRNA downstream 7282 14998676 ~ 15022578 (+) False LOC110510993
XM_036969933.1 mRNA downstream 7282 14998676 ~ 15022578 (+) False LOC110510993
XM_036969938.1 mRNA downstream 7282 14998676 ~ 15022578 (+) False LOC110510993
XM_036969928.1 mRNA downstream 7660 14999054 ~ 15022578 (+) True LOC110510993
XR_002471682.2 mRNA downstream 64436 15055830 ~ 15061264 (+) False LOC110511152
TU260071 other upstream 9921 14942150 ~ 14974977 (+) False LOC118944476
TU259593 other upstream 280923 14703601 ~ 14703975 (+) True G226941
TU259410 other upstream 574817 14408872 ~ 14410081 (+) True G226791
TU259427 other upstream 594470 14389477 ~ 14390428 (+) True G226807
TU259324 other upstream 705043 14278432 ~ 14279855 (+) False LOC110510822
TU260122 other downstream 5765 14997159 ~ 14998075 (+) False G227405
TU260123 other downstream 5765 14997159 ~ 14998075 (+) True G227405
TU260267 other downstream 81750 15073144 ~ 15095913 (+) True LOC110511049
TU260351 other downstream 252552 15243946 ~ 15244282 (+) True G227606
TU260768 other downstream 696949 15688343 ~ 15696644 (+) True zgc:162160

Expression Profile