RNA id: XM_036969938.1


Basic Information

Item Value
RNA id XM_036969938.1
length 1796
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110510993
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14998676 ~ 15022578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACAAAAAGAAAGTGGGGAGGCCCACGTGTGAGAGCCAGCAAACAGAAAGagtgggtgagagaaaaaaaagtgcCGTGAGCAAGGGATGGAACGAGGAAGTCATGAGCAGAAGGGTGTGGTCGACTAACGGTTCTTAATGGTTcctgactgacacacagagaaAAGGGACTGTGGATACTGCACTGGAACGAGCTCTGGAACTAAGCGACAACTCAGGATGGACACCAAGATTCAGCTGAGCTGGATGGCAGTATCTCTGTTTCTCACACTACCAGGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAAAATGACTCTGGTGGCGAATGTTACTGCAGCTCCCTCTCCAGCCAGAACTGGTGCACCTACACATGCCTCCTGTCCTGTTGAGCTCAACCCTCCCAGAGTAGTAGTGAGATATGGAGAATCAGTCTCAGTCAACTGcaccacatccacagaccccGAGGGGATGGGGTGGGAGGCCACGTACGGAGATACAGGTTTGCATGGAAATGTCAACTTTGTCACCTGGACTGTGAAAAGACTCATGGACTGGACAATAGAACCTAAATGCTACATCAAGTCACAAAATGGAAGTCAGTGTACTGAGATTCTCCCTGTCATTCTCTACAAGACTCCAGACAGcgtgtctatctctcctctgagCCACTCTGGTCCAATGATGGAGGGGAAGGAGTACCAGCTGCAGTGCGACATCCAGAACATCGCTCCTCTACAGAACCTGGTTGTGAGGTGGTACAAAGGGAATGAAACTATAGAGACTCAAACGTTTAATGACTCCACAAAGGAACTAGTGAATATGTCCTCCACTATCACCATCACCCACAAGAGATATGAGGGTGAAGTAGAGTACAGATGTGAGGCAGAGCTGGACCTGGGACCAGAGGGACCAAAACCTTCTGCCTTGTCATCAAAACCTCTTTATGTTTACTGGTCCCTTGCTCAGAGCCCTACCACCACACACCCCAATCGACCGGTGGAAGTGACTCCCTCTCCAGACAGAACTGATTCAAAGTGGGATGAACCATTCAATTATGACTACTACTTCCTCCGTGTTGTTGGTCTGTCTATGGCCGCAGCACTCTTCATCCTGGGTATTATGGTCATTAGCTGTGGTAAAGTATGCCGGATGCCTAGGTGTCATGTGGGCACAGGGAAGTCGTACCAAGTGTCCAGAGAGTAGTGAGGGGACAAACGTGTTACTGAGTGGCCTCAAGACACCAGAAGAGTTCATCAGAGGGACATGGAGAAACAACACTGATACAACATATTAtcgaccatgtgtgtgtgtatgtttgagtttgagtttattttatttttacagggacagtgcacattatgtgtgtgtgaaaACGTTGTTGGACAAAACTCTGCGTCTGTCATTTCAGAGATGAGAACGTGATATGTGTTTCATGTGCCTTTCCCACAGACTGCAAGTGACTCACTCAACATTATGAAattacccctccctcactcttctAAAGACTTACCTGTAGTTTTAAATGCAAGTTTTATTATACTTTGGCACTCATGTTTCTATGTATATTTTGAAATGCTTACAAAATGTTACAGaatacatactgtagatgttACGTAGCTCAGAGGCGCCCCCAAGAGCACTGGAAGAGGTACTGATCCTTTTTTTTCTCATATCCCAGAGACAGCAATTTCATGCCTAGCTTTTCACAGATCATTGTGTAGATTTTATCTGTAGATTTGTCACCAACTTGAATTATATTTTCTCTAATAAATCACATACATGTCCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260074 lncRNA upstream 15621 14975592 ~ 14983055 (+) True LOC118944476
TU260073 lncRNA upstream 27389 14967957 ~ 14971287 (+) False LOC118944476
TU260082 lncRNA upstream 70928 14927508 ~ 14927748 (+) True G227369
TU260056 lncRNA upstream 82375 14916052 ~ 14916301 (+) True G227354
TU260035 lncRNA upstream 102355 14896033 ~ 14896321 (+) True G227333
TU260218 lncRNA downstream 21085 15043663 ~ 15043953 (+) True G227489
TU260221 lncRNA downstream 22369 15044947 ~ 15045254 (+) True G227492
TU260287 lncRNA downstream 74147 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA downstream 74147 15096725 ~ 15102227 (+) True LOC110511142
TU260289 lncRNA downstream 93449 15116027 ~ 15120024 (+) True tyrobp
XM_036969882.1 mRNA upstream 7282 14984898 ~ 14991394 (+) False LOC110510950
XR_002471682.2 mRNA downstream 33252 15055830 ~ 15061264 (+) False LOC110511152
XR_002471683.2 mRNA downstream 33252 15055830 ~ 15061264 (+) False LOC110511152
XR_005041157.1 mRNA downstream 33252 15055830 ~ 15061264 (+) False LOC110511152
XR_005041158.1 mRNA downstream 33252 15055830 ~ 15061264 (+) False LOC110511152
XR_005041159.1 mRNA downstream 33252 15055830 ~ 15061264 (+) True LOC110511152
TU260122 other upstream 601 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 601 14997159 ~ 14998075 (+) True G227405
TU260067 other upstream 7382 14990520 ~ 14991294 (+) True LOC110510950
TU260071 other upstream 23699 14942150 ~ 14974977 (+) False LOC118944476
TU259593 other upstream 294701 14703601 ~ 14703975 (+) True G226941
TU260267 other downstream 50566 15073144 ~ 15095913 (+) True LOC110511049
TU260351 other downstream 221368 15243946 ~ 15244282 (+) True G227606
TU260768 other downstream 665765 15688343 ~ 15696644 (+) True zgc:162160
TU261485 other downstream 1490925 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 1620773 16643351 ~ 16647584 (+) True LOC110503770

Expression Profile