RNA id: XR_002471683.2


Basic Information

Item Value
RNA id XR_002471683.2
length 3242
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC110511152
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15055830 ~ 15061264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgatcaaaggttagtgattaattttctctctatttgtggtttttgtgactcTGGCTGGAAAatatttggctggaaaaatggctgtgttttttctgTGGCTATGTGGTGATCTaataattgtttgtggtgcttttggtgtaaagcatatttgaaatcgaacactgtggtgggattaacaacaagattagctttaaaatggtatgagatacatgtatgtttgaggaattttaattatgagatttttgatgttttgaaatTGACGCCCTGtgctttcactggctgttgtcatatcgctcctgttatcgggattgcagccataagaaccTAGTGGATGGCAGATCCCACTACAACACGTTTGACGGGCAGGCTTTTGAGTTCCTTGGGACGTGACTACATCCTGCTCCATACCTGCCAGCTGCACTCTTAAACTGTTGAGGAGTTTATGGTGGCTTTGCATCATGGCAGTGAGAATGCATCCCGGGAAATACACATGGTCATCATAGGATGAAGATGGTTCTCTGGCCATCTTGGAGAGGTTCAGGTCAATGGAGTCCTTGAGAACCTGCCCTTCTCCCACAGTGATGCGAGTCTGCATCAGAATGGTCATTTGGTAACCATCCAGGCCCTTGGGTCAGTCCAGGTCATCTCCAGTCTACACAACCTGCTCCTGGTAAATATCTCAGACTCATCCTACTAGAGTATGGCCTGTGGGGGAACTACAACAATGACCCCATGGATGACCTACAGGTGCCCAACggaaccctgacctctgaccccgaTGGGTTGTGTGTCGTCTGTTGGCATGGGTCATGTGCAGGCCTGCGTCCCCCTGCAGTGATTGGTTTGGGGCTAACTGCCCCCTCTGTCAGTGCCCCTGCATGGCTGTGAGCTCTACTGTGGCCTACTCACACTGCCTGGTGGCCCCTTCACCCCCTGTCACTCTGTAGTCCAGCCACAGACCCACTACATGGCTGATCTGTGAGTGGCAGGGTTTCAGACACAGCAGCCGCTGTGTGAGCAGCTGCAGGCCTATCATGTGGAGTGTCAGGAGGCAGGGGTCAAGGTGGGCCCATGGAGGAACCACACTGGCTGTGCTCATTGCCCCCAGTTCAGCCACTACAGCCTGTGTGCCAACACCTGTTCCTCTCTGTGCCTTGGAGTGGCGGGGTCTGTGCCGTGCCCAGATGGCTGTGAGGAGGGGTGCCAATGTGACCAATGGTCAGGCCTGCGTACCAGCAGGGCAGTGTGGCTGCTGTCGGGACGGGAGGAGGTTTTAGATACGTTTATAGAAAAGCCTATTGATGGAAGAGCAGGCCTCTCCAGAAGTGCACTGCAGGCCTCCCACAGATCTGCACCTGTGGGGCTTCCCTGGTCTGTGAACCATTTGCTTGCCCTGACCAGCATGTCTGCACTGTCTCAAATGAAGTCCTCGGCTGCCACAGCACAGaggggtgtgtgtgtccagagcaGTGTGGCTGTACTGATCCCAGCGAAAACTACCAGACTCAATACCACCTTCCGGACCCCAGAAGACTGTGGACAGCTCTGCCTCTGTGACCCAGCCACCGGGGACATCctctgcacccctgcccagtgcCTCACATGCTTACATCTGTAAGCAGCTGGAGGGCAGGCGAGCCTGCCAACTCTCACAACCCTTCTACTGTACCTTGATGGTTGGCAACATTTAATTTGTTTTGACGGGCAAGAGTTTTACTTCAGGGATAGCTGTTCATACATGCTGGCTCAGTCAAGCTCCAATCAGACAGGGTTGATCCCCTTTACCGTCAGCATCTCTGCTGCCAGCTGCAACAGCAGTTTAACTTTTTCCACCTCAGGTTAATGGACTGCACAAACCCTTACCATACTCCTTCCTTAAAAGCCTTGTGGtgacctctctccccctcgtcaTCCAGATTGGAGTTTGGCCTGCAGCTGATTCTGTAGAAGACTGGCACCACCATGGTCATCCTTACCCGCACCTATGACTTTGCTGTGTCCGGTCTCTGTGGCAACGGCAACAGACAGGACGACTCCCTGCTGTCGGACGGCGAGCGTACTCGGAACACCCTGGAATTGGCCCACagctggaggacaggaggggcTGCAGGTCCACCTGTGGCTCCAGTCAGCTGGGGTGCAGCGAAGAGCAGGACCACAAAGCTGTTTGAGACCAGTGATTTTCTGTGAGGCGCTGCTCAACGATCTGAGTCTGTTTGGAGAGTGTGCCTCAGTGTTGAACCCTTAGCCTTACTTCCACAGCTGTGATGACCAGTGTGACGTATCCCGAGGCCATGGGTGCCTGTGACGTGGTGATGGCCAGGAACAGTGTGTTTGGAGGCTGCTGGAGAAGGGTGAAGGCCCAGTCCTACAGGGATGAGTATGTGAGGGCGGTGGGGCCACATGGACGCCACCTGCCTCTCCCTGGAGGACTACGCCTCAGCCTTACATTACATAAAGGATGAGGAGCAACTCTACATGGGCTGTGCTGAAAAGTGATGGCGTCATCCCCTGGGATGGATGATGTGGGAGATGACGGCCTGCAGTCAAGGGCAGCAGTAGCCTCTGGGCTTGGGGGCTGCAAGGCCTGAGTCTGTTCCCTCCAGGACTGTTTCAAGCTGACCACTCTGAGTGGGCTGCAGCAGACCCTGGAGCCCCAGGCCCCCTACCTGCTGGTGTCCCTGTGTGACATAGCTAGTGACGCGTAGTTCAGAATGTTATCCTACCGTGGGGTCTGTGGAAACTCCAGGCCTGTCAATGTGCTGCATGTCTTGCTGAATGGCAAGAACTTTGTGACCCAGGATGGCCATGTGGAGGTGAACGGACCCTGTCCCAcccctattctctctcctcctcatccctgtcCCTCAGTATGACCCAGGAGAGGTCAGGGGTCGAGGTGGTCCTGAGGGATCCTTGGAAGGACACTAAGCTGGAGGTTGAAGTGTGCGTCTCTGTGGTGACGGTAAAGCTGTCGCAGTGGTCTGCCTGGTGAGCTGTGCGGTCTCTATGGAAACCACAACACACTGCTGTCGGAGTAAGGCCAGGCCACTGTCCTCGCAGACTTCCCTGGCTGGTACACATTTAAGTGCATTTAGTATTCATCCCTAGAATCCTTATTTGTCATTATAGCAAGTCAGTTATGTTTCTAAATACCGTTCGCTCTCCTCACAGTGGCTTCAATTGATAAAGGATGACGACCCACTAATGTATGCAAATCTGTTTTAAAACCTTTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260221 lncRNA upstream 10576 15044947 ~ 15045254 (+) True G227492
TU260218 lncRNA upstream 11877 15043663 ~ 15043953 (+) True G227489
TU260074 lncRNA upstream 72775 14975592 ~ 14983055 (+) True LOC118944476
TU260073 lncRNA upstream 84543 14967957 ~ 14971287 (+) False LOC118944476
TU260082 lncRNA upstream 128082 14927508 ~ 14927748 (+) True G227369
TU260287 lncRNA downstream 35461 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA downstream 35461 15096725 ~ 15102227 (+) True LOC110511142
TU260289 lncRNA downstream 54763 15116027 ~ 15120024 (+) True tyrobp
TU260314 lncRNA downstream 86503 15147767 ~ 15147995 (+) True G227569
TU260315 lncRNA downstream 86817 15148081 ~ 15148286 (+) True G227570
XM_021592115.2 mRNA upstream 33252 14998676 ~ 15022578 (+) False LOC110510993
XM_036969933.1 mRNA upstream 33252 14998676 ~ 15022578 (+) False LOC110510993
XM_036969938.1 mRNA upstream 33252 14998676 ~ 15022578 (+) False LOC110510993
XM_036969928.1 mRNA upstream 33252 14999054 ~ 15022578 (+) True LOC110510993
XM_036969894.1 mRNA upstream 64436 14988149 ~ 14991394 (+) False LOC110510950
LOC118944484 mRNA downstream 2815 15064079 ~ 15066323 (+) True LOC118944484
XM_036970018.1 mRNA downstream 10741 15072005 ~ 15095913 (+) False LOC110511049
XM_036970066.1 mRNA downstream 10742 15072006 ~ 15095913 (+) False LOC110511049
XM_036970115.1 mRNA downstream 10768 15072032 ~ 15095913 (+) False LOC110511049
XM_021592148.2 mRNA downstream 11551 15072815 ~ 15095913 (+) False LOC110511049
TU260122 other upstream 57755 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 57755 14997159 ~ 14998075 (+) True G227405
TU260067 other upstream 64536 14990520 ~ 14991294 (+) True LOC110510950
TU260071 other upstream 80853 14942150 ~ 14974977 (+) False LOC118944476
TU259593 other upstream 351855 14703601 ~ 14703975 (+) True G226941
TU260267 other downstream 11880 15073144 ~ 15095913 (+) True LOC110511049
TU260351 other downstream 182682 15243946 ~ 15244282 (+) True G227606
TU260768 other downstream 627079 15688343 ~ 15696644 (+) True zgc:162160
TU261485 other downstream 1452239 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 1582087 16643351 ~ 16647584 (+) True LOC110503770

Expression Profile