Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028749 |
| length | 780 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 6 |
| gene id | XLOC_014525 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 7249041 ~ 7274844 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0032526 | response to retinoic acid | biological_process |
| GO:0090575 | RNA polymerase II transcription regulator complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0044323 | retinoic acid-responsive element binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-436 | Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including blastoderm; digestive system; eye; gonad; and tail bud. Orthologous to human RXRB (retinoid X receptor beta). |
| ensembl_id | ENSDART00000147429 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00028747 | lncRNA | downstream | 4457 | 7258339 ~ 7260919 (-) | False | XLOC_014525 |
| TCONS_00030150 | lncRNA | downstream | 349803 | 6900956 ~ 6915573 (-) | True | XLOC_014517 |
| TCONS_00030149 | lncRNA | downstream | 364040 | 6892715 ~ 6901336 (-) | True | XLOC_014516 |
| TCONS_00029754 | lncRNA | downstream | 435559 | 6801438 ~ 6829817 (-) | True | XLOC_014513 |
| TCONS_00029753 | lncRNA | downstream | 668759 | 6592036 ~ 6596617 (-) | True | XLOC_014511 |
| TCONS_00028753 | lncRNA | upstream | 1216 | 7276060 ~ 7283550 (-) | False | XLOC_014526 |
| TCONS_00028754 | lncRNA | upstream | 12686 | 7287530 ~ 7291703 (-) | True | XLOC_014526 |
| TCONS_00028764 | lncRNA | upstream | 226226 | 7501070 ~ 7501739 (-) | True | XLOC_014533 |
| TCONS_00030151 | lncRNA | upstream | 238274 | 7513118 ~ 7513678 (-) | True | XLOC_014534 |
| TCONS_00028767 | lncRNA | upstream | 285076 | 7559920 ~ 7575188 (-) | False | XLOC_014537 |
| TCONS_00028743 | mRNA | downstream | 24749 | 7237188 ~ 7240627 (-) | True | XLOC_014524 |
| TCONS_00028742 | mRNA | downstream | 40170 | 7205896 ~ 7225206 (-) | True | XLOC_014523 |
| TCONS_00028739 | mRNA | downstream | 40186 | 7179740 ~ 7225190 (-) | False | XLOC_014523 |
| TCONS_00028752 | mRNA | upstream | 1216 | 7276060 ~ 7291733 (-) | False | XLOC_014526 |
| TCONS_00028755 | mRNA | upstream | 34206 | 7309050 ~ 7358184 (-) | False | XLOC_014527 |
| TCONS_00028756 | mRNA | upstream | 34206 | 7309050 ~ 7406933 (-) | False | XLOC_014527 |
| TCONS_00028757 | mRNA | upstream | 35293 | 7310137 ~ 7321221 (-) | True | XLOC_014527 |
| TCONS_00028758 | mRNA | upstream | 139098 | 7413942 ~ 7420867 (-) | True | XLOC_014528 |
| TCONS_00028719 | other | downstream | 1026387 | 6232164 ~ 6238989 (-) | True | XLOC_014509 |
| TCONS_00028709 | other | downstream | 1422171 | 5843091 ~ 5843205 (-) | True | XLOC_014503 |
| TCONS_00028706 | other | downstream | 1491341 | 5773921 ~ 5774035 (-) | True | XLOC_014501 |
| TCONS_00028700 | other | downstream | 1849461 | 5415799 ~ 5415915 (-) | True | XLOC_014495 |
| TCONS_00028699 | other | downstream | 1884669 | 5379593 ~ 5380707 (-) | True | XLOC_014494 |
| TCONS_00028751 | other | upstream | 1216 | 7276060 ~ 7277593 (-) | False | XLOC_014526 |
| TCONS_00028762 | other | upstream | 193357 | 7468201 ~ 7468316 (-) | True | XLOC_014531 |
| TCONS_00028774 | other | upstream | 550551 | 7825395 ~ 7825533 (-) | True | XLOC_014543 |
| TCONS_00028791 | other | upstream | 1577696 | 8852540 ~ 8852655 (-) | True | XLOC_014556 |
| TCONS_00028818 | other | upstream | 2737654 | 10012498 ~ 10012614 (-) | True | XLOC_014580 |
