RNA id: XM_036969991.1



Basic Information


Item Value
RNA id XM_036969991.1
length 1068
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110511049
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15072005 ~ 15095913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACTGCTGGTCCCCTCCGATACAAAGCTGTATGTGTTCATCAACAAGGCTGACGTTAAAATGCTGGGATCTGCACCTATTCCCCCCACAACCAGACCTGTCAGACACTGGTGGTGGGAGAACTTCATCACTCCGCTGGTCAGGACAACTGTGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCAGCTTTGGGGTCAGGATTTGGCAGGGAGATGCCAGGGTCATCTATAGGCAGGGACATGCCAGCATCGAGGATGGTTGAAAAGGaCTATGACTCTGCATTTCACTACGGTGAGTGGGGGATGGATCAACATGGACTAACTCCACTGGGGGTAAACGTGACACTTCTCAGGAAATATCTGGGAGGTCAAGACGGGTTTGCGTTTTCCCTCCATTTTTCAAGTTCAACTGGCAAACAGTCCCTcccactctgctgtaacacactgCTCTATCCTGTCTTCAACTATGAATCTCTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATAGTCCTAATCGTCAgccagAAATGCCCATGTAAATCAAGTCCGAAGTCACGtgtatactcgtcagacgtcatgatacctcatcagaagtgtccacttaatttgagggctgaagTGTTTGGACCGCAACCCTTGACTGAGTTCATTGCCTTCTGGGGTAcctgaggcagaggcaggggttGTGACAGGTCCCCAGTGATGTAAAGTCTCGCCACCAGGCGGCAGCATTGGACAGTGGAGGACTAACTATGGCTATCTCCCAGAGAGCACAAGgctcattttttaaatttcatcCTGCTGATATGTTCTcttgacatgtttttttcttttctcttttttctATATGAATGAATCTACAGCGACAGTATTCTGAAGGCATAATTGGTTGATGCAGTAGGGTAGGCTATAAAACCTGTCATATGTGATAGACACACATGAACAAGCAATTTTGTAAGTTAGAACTTGACTATTTATGACTATTTTAAATTGTAATATTTCCACATTGTTAAATAAAGTGATGTAGATGGGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU260221 lncRNA upstream 42515 15044947 ~ 15045254 (+) True G227492
TU260218 lncRNA upstream 43816 15043663 ~ 15043953 (+) True G227489
TU260074 lncRNA upstream 104714 14975592 ~ 14983055 (+) True LOC118944476
TU260073 lncRNA upstream 116482 14967957 ~ 14971287 (+) False LOC118944476
TU260082 lncRNA upstream 160021 14927508 ~ 14927748 (+) True G227369
TU260287 lncRNA downstream 812 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA downstream 812 15096725 ~ 15102227 (+) True LOC110511142
TU260289 lncRNA downstream 20114 15116027 ~ 15120024 (+) True tyrobp
TU260314 lncRNA downstream 51854 15147767 ~ 15147995 (+) True G227569
TU260315 lncRNA downstream 52168 15148081 ~ 15148286 (+) True G227570
LOC118944484 mRNA upstream 21446 15064079 ~ 15066323 (+) True LOC118944484
XR_002471683.2 mRNA upstream 26505 15055830 ~ 15061264 (+) False LOC110511152
XR_005041175.1 mRNA downstream 2952 15098865 ~ 15101053 (+) False LOC110511142
XM_036963644.1 mRNA downstream 19944 15115857 ~ 15132280 (+) False tyrobp
XM_036963639.1 mRNA downstream 19959 15115872 ~ 15132280 (+) False tyrobp
NM_001246340.1 mRNA downstream 30554 15126467 ~ 15131282 (+) False tyrobp
XM_036964096.1 mRNA downstream 40859 15136772 ~ 15138356 (+) True LOC118944490
TU260122 other upstream 89694 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 89694 14997159 ~ 14998075 (+) True G227405
TU260067 other upstream 96475 14990520 ~ 14991294 (+) True LOC110510950
TU260071 other upstream 112792 14942150 ~ 14974977 (+) False LOC118944476
TU259593 other upstream 383794 14703601 ~ 14703975 (+) True G226941
TU260351 other downstream 148033 15243946 ~ 15244282 (+) True G227606
TU260768 other downstream 592430 15688343 ~ 15696644 (+) True zgc:162160
TU261485 other downstream 1417590 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 1547438 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 1698786 16794699 ~ 16798932 (+) True LOC100653482

Expression Profile