RNA id: XM_036970146.1


Basic Information

Item Value
RNA id XM_036970146.1
length 3040
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC118936618
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15102353 ~ 15109931 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaattgtcattagaaaccacaatTTTAAGGTTTCAGCAAGTCAGCCGTATCATCTATGTtttttttaaggcagtaaatAAGGCTGAATGGACTGTTTCGCTGCCAAACAAGGCTCCGCtcatagccaggtgtagcagtgggaAGATGTTGGGTCTGCTGTTGgggcagctttatgtaggccgttTGTGATCACAGTTTGTGATCGTTATactgcaattaatgtattgtttagtgttgtgttgtgtagtggctttacTGGCATTCATACCACTTTTTGCCCCACCaaaatgtacatgctaaaatccccactgacacacacaaaacacatacaAACAAATTAGAAGGTAACCTGGTAGTCAAAATCATCCCCACACTTTGAATCAGAACATACATTGTTAATTCAGAAAATATTCTGGAAAGTTAGTTGTCTAACATAACAAATATTATCTCTGTCTacaccctcctcttccctccctccatctctgagCAAGTGGAGCGTAGCGCTGCGCTTTGATGTGGCGCTCTTGCGCACCCAATGTTCACAGACTATAGTGGGCGTGGTGTTGGAAATGGCGTCACCGGCAACGTGTTATGTGTGTACATAGTAGCAAGATTACAACGAGCCTGTGACAGAAGAGACACACGAGTCAGATCATACAAGTCTGACACTTACAGCAGGACCAGGAATCGCTGCGAATTCAAACCCCGAAGAAGAGACATCAAATATTTTGGACCAAGAGGAGCTGACAAGGTGCTACAAAGAAAAAGGGATTCTGACATGCACTGGCAGAAATCACCGAAGGAGAAGCCGTGTTACACTCTTCCCACAGTGAAGAAACTCCTGgagcagaagaggaagagggaaaccTCCTCGACGGCAACAACCAGTACCGGTGTCTCCACTGCCACTGTCCTCTCCCAACAGGTGTCAACACCAGAGAAGTCTACCTCAACAGGTGTAGCCAGCAGCTACTCAGACATGGCAGTGGGGTATGAGAGATGGGGTCCTATGGATGAGCACCAAGCCCTCTTGGCCATACAGGAAGGTCCATTCTCCCCTATGGGGAACAATTACTTCTCCAGCCCATCCTCCTCTTTGGACTACAGCCATACTCCGGCCTACAGCCCTCAGATGGTCTCCAGCTATAACACACAGCAGATGCAGGACTACCCAGACACCAGGATGCCTCAGCATTATACGGAGTGTCCAGTGACCGAGGCTGTGTCTAGTTTGGTTCCTTCTGGGCCCCTGCAGACCGCTGTCTTCTCCTGGTCGTCGGGGGCCTTGGGCCCCACAGAACCTGTCCAGCAGGTGTTTAGTGGCCAGATGGATGTCACTAAGCTGGAGGAAGCCAGGATGTTCCTCAGAGGGATGGACTACAGCAGAACCACCTGGCAGGATGACGACGGAGAcacgaTTCTGCATATCTATACAGCCAAGGGCCTGAGGGAGTATGCATTCGCTGCAGCAGAGAGGCTTGCTGAGCTGGGCAGGCTAGACTCCAAGGAACACAAGGGGAAGACTGCTTTGCTGGTGGCGGTGACTGCTAACCATCCGGAAATCGTCCAGGATCTGTTGTCTTTAGGGGCGGATATAAATGCCTGTGATGTCAAAGGTCAAACAGCACTTCATCTTGCTGCCACCTATGGCTTCCCCAGGGTTATGCAGGTTATTCTCTCCATTGGGCCTGGAGTGAACCTGGAGGCTCGCAATTTTGAAGGTCTGACTCCTCTGCACTGTGCAGCCATCTCCCACAGTGGCACCCTgaagactctctcctccctctcctccacaggGCTGGGTGATGCCAGCCTCCGTGCCCTGGCAGAGGAGAAGCTCTCCTGGCTGCAGATGCTACTTAACACCGGAGCCTCCCTGACTAGCCAGGAAATCAAAAGTAACAAGACGGTTCTTCACCTGGCTGTGAAGGAGGGGAACATCCAGCTGGTTCGCCATCTGCTGAAAACCCCCCTGGACAACATGAGGGACTTTGTCAACATGAAGGCCCACGGTCATACCGCACTGCACATGGCTGCTGGTCTCCATGGCAGCCCACACCAGGAGGAGATGCTGAGGCTGCTGCTGAGCAGAGGGGCCGACCCCAGCATCCGCAACCTGGAGAACGACCAGCCTGCACACCTGCTGCAGAGTGGACCCCACGGGGAACAGCTCAAGCTCATCCTGAAGAAGCGAAGTGCTTCCTCTCGTCGACGTGTAATGTCCTTACAGGACCAAGACTGACCCGGACTACTTTTTATGTCCCTGTGTATCCCTCCACCTCTTTTCAGAGGAAGTACTGAAGGTCTGTACTGTAGGCTGAATCCAACAGGGAGGGATTCTAGCGTATCTTCATGTGAGGATTTTCAAACACCGTGAATCTCTAATATGTACTAGAGCATTCACTTTGAAACTATATGTTTGATTGACATGATTTTGGTCCCTATCTGAATTCAGTTAGCAATGACGTTTATGTATTTTTATATCTTAATGGGCACCTATTGTTTTTGTTTAATGGATATCTAGCAATGAGCAGTGGTAACAGGTGGTATTCCAGTCCCCCCTGACATTACTGTCACTCAGTACAACCTTGATTTCTATGATAATCGTTTACATTATATTCAAAGCTTCACAGACTCATTGTgtgagtacccccccccccccccccccagccggGAAGCCCTCCTTAGCGGTATATCTGAGGAGGGTTTCTGGGCTCCCACCCCCACTCATTCTCTTGTCAAAACTTCCCACCATGGTCAGAAATCATATTGGTTTGTTGAAAGGTGGTTGTTGTTTCACTAAGCATGTGACACAGTGTACCATTATGCTCATGCTTTCAATGTTGCTTATAACTTATCTAGGTCTTTTCTTTTTATATTTGATATACTCACAGCACTCATTGAATAGCTAATATATTGTCATTGGTGGAAAAACTACTCAAGTATGACTTTTGAGTAaaggtaaagataccttaatagaaaatgactcaactaaaagtgaaagtcacccagtaaaatattacttcagtaaaagtgtaa

Function

GO: NA

KEGG:

id description
K14214 NFKBID; NF-kappa-B inhibitor delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260161 lncRNA downstream 79778 15015093 ~ 15022575 (-) False G227438
TU260162 lncRNA downstream 84366 15004287 ~ 15017987 (-) False G227438
TU260163 lncRNA downstream 84366 15015093 ~ 15017987 (-) True G227438
TU260203 lncRNA downstream 103952 14997217 ~ 14998401 (-) True G227476
TU260199 lncRNA downstream 110947 14990463 ~ 14991406 (-) True G227472
TU260418 lncRNA upstream 48071 15158002 ~ 15171903 (-) False plm
TU260419 lncRNA upstream 48071 15158002 ~ 15171903 (-) True plm
TU260460 lncRNA upstream 55696 15165627 ~ 15165998 (-) True G227707
TU260470 lncRNA upstream 84266 15194197 ~ 15216186 (-) True G227717
TU260486 lncRNA upstream 115895 15225826 ~ 15226093 (-) True G227732
XM_036969943.1 mRNA downstream 61460 15023525 ~ 15040893 (-) True si:dkey-262k9.2
XM_036969951.1 mRNA downstream 64191 15023525 ~ 15038162 (-) False si:dkey-262k9.2
XM_036969956.1 mRNA downstream 66390 15023525 ~ 15035963 (-) False si:dkey-262k9.2
XM_036969961.1 mRNA downstream 67071 15023525 ~ 15035282 (-) False si:dkey-262k9.2
XM_021592051.2 mRNA downstream 268322 14780067 ~ 14834031 (-) False LOC110510856
XR_002471684.2 mRNA upstream 2904 15112835 ~ 15115841 (-) True LOC110511165
XM_021596779.2 mRNA upstream 48661 15158592 ~ 15171916 (-) False plm
XM_021596777.2 mRNA upstream 48661 15158592 ~ 15171917 (-) False plm
NM_001165198.2 mRNA upstream 48662 15158593 ~ 15171796 (-) False plm
XM_036970183.1 mRNA upstream 74887 15184818 ~ 15204146 (-) False LOC110519917
TU259832 other downstream 465643 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 577499 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 577499 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 627187 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 1100545 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 426434 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 491084 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 596303 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 677691 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1729458 16839389 ~ 16839839 (-) True G229373

Expression Profile