RNA id: NM_001246340.1


Basic Information

Item Value
RNA id NM_001246340.1
length 396
RNA type mRNA
GC content 0.48
exon number 5
gene id tyrobp
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15115857 ~ 15132280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCttagacctctcctctcctctagtctccttaGTAGGACCAGGCTGAAAATGGGCAAGGCCCTCTGTATCGTGGCTCCCCTGAAAGGATTATTTGGTCCTGCCGAAGGAGAACAAGactgtggCCACTGCTATCAGATAGATATGGGGGTAGTGGTGGGAATCATTGCCTGTGACATCATCCTGACCCTCCTCATCGCTCTCACCGTGTTCTGTTTTGCTACCATCCGGAAGAAGAGGAGTCAACAGGAATCCAGACTGGaggGAAAAGGGAAAACAATCACAGCATCAAAAAGGAAGACAGTAGAAATCACAGAGTCTCCCTACCAGgagctgcatgGATTTCAGTCAGACGTGTACAGTGATCTCCAACAGTTTCAGaaatgagactacttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260289 lncRNA upstream 6443 15116027 ~ 15120024 (+) True tyrobp
TU260287 lncRNA upstream 24240 15096725 ~ 15102227 (+) False LOC110511142
TU260288 lncRNA upstream 24240 15096725 ~ 15102227 (+) True LOC110511142
TU260221 lncRNA upstream 81213 15044947 ~ 15045254 (+) True G227492
TU260218 lncRNA upstream 82514 15043663 ~ 15043953 (+) True G227489
TU260314 lncRNA downstream 16485 15147767 ~ 15147995 (+) True G227569
TU260315 lncRNA downstream 16799 15148081 ~ 15148286 (+) True G227570
TU260318 lncRNA downstream 20066 15151348 ~ 15151581 (+) True G227573
TU260325 lncRNA downstream 50589 15181871 ~ 15182514 (+) True G227580
TU260354 lncRNA downstream 116494 15247776 ~ 15248002 (+) True G227609
XR_005041175.1 mRNA upstream 25414 15098865 ~ 15101053 (+) False LOC110511142
XM_036970037.1 mRNA upstream 30554 15087780 ~ 15095913 (+) False LOC110511049
XM_036964096.1 mRNA downstream 5490 15136772 ~ 15138356 (+) True LOC118944490
XM_036964111.1 mRNA downstream 7276 15138558 ~ 15141461 (+) True LOC118944493
XM_021596785.2 mRNA downstream 73245 15204527 ~ 15212699 (+) True LOC110519918
XM_021596783.2 mRNA downstream 118612 15249894 ~ 15271273 (+) False LOC110519916
XM_021596782.2 mRNA downstream 118630 15249912 ~ 15266545 (+) False LOC110519916
TU260267 other upstream 30554 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 128392 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 128392 14997159 ~ 14998075 (+) True G227405
TU260067 other upstream 135173 14990520 ~ 14991294 (+) True LOC110510950
TU260071 other upstream 151490 14942150 ~ 14974977 (+) False LOC118944476
TU260351 other downstream 112664 15243946 ~ 15244282 (+) True G227606
TU260768 other downstream 557061 15688343 ~ 15696644 (+) True zgc:162160
TU261485 other downstream 1382221 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 1512069 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 1663417 16794699 ~ 16798932 (+) True LOC100653482

Expression Profile