RNA id: XM_021596777.2



Basic Information


Item Value
RNA id XM_021596777.2
length 1294
RNA type mRNA
GC content 0.42
exon number 7
gene id plm
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15158002 ~ 15171917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTCAAGCTGAGCAAACCTGTTGAGCCTCAGTGAAAAAAGGGTGTTGGCGACTGTCTGATTTAAGAGTACGTTCGTCTATTGTGTGTCGCTCCATGCCCGACATTTCCTGGTTTTCCCCCTACACACATCTCCATTTGGGTTTAACGCGTGTCGGAGCAGTTGCGTCCCTTGTGTTCGCAGAGGAGCAGAAAGAAATGGAGGAGGATGATCCATTTACCTTTGatTATCACAGGCTACGTGTTGGGGGGTTGATCCTGGCAGCAGTTCTGTGTCTGATCGGCATCACCATCCTCTTCAGCGGACACTGCAGATGCAAGTTCAACCAGGACAAAAGGAGGAGGTCAGGAAGCAACGCTGCCCAGCCACTCAACGACCAAGCTCGGGCCAGTGAGTGCTAGGAACCAAATGCCCACCTGGCAGCAGGTCAAATCGACTTCCTGGTTCTGCATCAATCAAGAGATAAAAATTGATGGGTGGAGTTGGCCTGTTTTTTGTCTGATGGAGGTTGTTTTTTAGAGAGTGGTGCTGTCCTCCCCAGAGGGAGGTGGTACTGTGCCATTGGAGATCAGAGGTGTGCTGCTTTTACCTGTGTTGCTGTTTTCCATTCCGCCCATTACTCCTGTTTCTGCTCCGCCCAATATTCACACTGTAACTCGCCACCAgcaagcacacacagacagacaaagcagGACACGATTTTTCCCCCATGTTCTTTGTATTTAAACAAATAACCAAATGATGCTGTGTGTCGATTCACTCATTATTTCATTGCAATGTTTTTCACCTTTAGTGACTCCAACTGTATGTGGAAATTATGTGGTAGATTTGACTGTTGGTGTGCGTTTTGAATTGCCATACTGTCCCCTAATAATCTTTCATGCATATACTTTACTGTAAAATAGGTACCGGTAGCCATAAACTATTATAATGTCAATAACTATTCACACACCTTTATCTTGATTATTCCTATATTAACTTTTTAGTTGAATGTAGAAAAGTGCACTGGTCTATGCAGAAGAATCTGTTGTATGATAAATGCAAGGTTTTTTAATAatacagaatgttaaaattatttCAATAAGCGGATGATATAGTCTTGTTTGAGAGTGTTTGCCACCAAAACAAAATGCATGTTATTTTAGTTTGCTAGATACCACTCAAACAATTACAGTCCCTGAAGAgggttttctccccaattggctTTTAATGAGTCACGTCTAAATTGAGATGTCTCTTGCCAAATGAATAGATGGTGTCTATGTTTGTAATTCAAATTAAAAGAGTTACCTTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU260161 lncRNA downstream 136017 15015093 ~ 15022575 (-) False G227438
TU260162 lncRNA downstream 140605 15004287 ~ 15017987 (-) False G227438
TU260163 lncRNA downstream 140605 15015093 ~ 15017987 (-) True G227438
TU260203 lncRNA downstream 160191 14997217 ~ 14998401 (-) True G227476
TU260199 lncRNA downstream 167186 14990463 ~ 14991406 (-) True G227472
TU260470 lncRNA upstream 22280 15194197 ~ 15216186 (-) True G227717
TU260486 lncRNA upstream 53909 15225826 ~ 15226093 (-) True G227732
TU260495 lncRNA upstream 71035 15242952 ~ 15243191 (-) True G227741
TU260496 lncRNA upstream 72104 15244021 ~ 15244286 (-) True G227742
TU260498 lncRNA upstream 74395 15246312 ~ 15246517 (-) True G227744
XR_002471684.2 mRNA downstream 42751 15112835 ~ 15115841 (-) True LOC110511165
XM_036970146.1 mRNA downstream 48661 15102353 ~ 15109931 (-) True LOC118936618
XM_036969943.1 mRNA downstream 117699 15023525 ~ 15040893 (-) True si:dkey-262k9.2
XM_036969951.1 mRNA downstream 120430 15023525 ~ 15038162 (-) False si:dkey-262k9.2
XM_036969956.1 mRNA downstream 122629 15023525 ~ 15035963 (-) False si:dkey-262k9.2
XM_036970183.1 mRNA upstream 12901 15184818 ~ 15204146 (-) False LOC110519917
XM_036970186.1 mRNA upstream 12901 15184818 ~ 15204146 (-) True LOC110519917
XM_021596795.2 mRNA upstream 45074 15216991 ~ 15230487 (-) True LOC110519925
XM_036964193.1 mRNA upstream 225756 15397673 ~ 15406356 (-) True si:dkey-65b12.6
XM_036970265.1 mRNA upstream 268817 15440734 ~ 15470012 (-) True LOC110519926
TU259832 other downstream 521882 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 633738 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 633738 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 683426 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 1156784 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 364448 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 429098 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 534317 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 615705 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1667472 16839389 ~ 16839839 (-) True G229373

Expression Profile