RNA id: XM_021596798.2


Basic Information

Item Value
RNA id XM_021596798.2
length 1651
RNA type mRNA
GC content 0.51
exon number 11
gene id gapdhs
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15299608 ~ 15319903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCCAGGGCGATTAGACCAATGCTCGTGTCACGTGTCTGCTATAAATTCGGAAATTGTATTCTCGGTTTGCACAGACACTGCAGCATCTCCCCTCAAGGTTCACCACCACAACCCAATCAACAGCAACTATGTCAGACCTCTGTGTTGGAATCAACGGATTTGGCCGTATTGGCCGCCTGGTCCTCAGGGCCTGCCTGCAGAAGGGAATCAAAGTCGTTGCCATCAACGATCCCTTCATCGACCTGCAGTACATGGTTTACATGTTCAAGTATGACTCCACCCACGGCCGTTACAAAGGTGAGGTGAGCATGGAGGACGGGAAACTGATTGTGGACGACCACTCCATCTCCGTATTCCAGTGTATGAAGCCCCATGAGATCCCATGGGGTAACGCCGGTGCTGATTACGTCGTTGAGTCCACCGGAGTCTTCCTCAGCATTGACAAGGCCTCTTCCCACATCCAGGGTGGTGCCAAGCGGGTGGTTGTGTCTGCCCCCTCCCCCGACGCCCCCATGTTCGTCATGGGAGTCAACGAGGACAAGTACGACCCCTCCAGCATGACCATCGTCAGTAATGCATCTTGCACGACTAACTGCCTGGCCCCCCTGGCTAAGGTCATCCACGACAACTTCGGCATCGAGGAGGCCCTCATGaCCACAGTCCACGCCTACACCGCCACCCAGAAGACAGTGGACGGCCCCTCTGCCAAGGCATGGCGCGATGGCCGTGGTGCCCACCAGAACATCATTCCTGCCTCCACCGGAGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTCAACGGCAAGCTGACTGGCATGGCCTTCCGTGTGCCCGTGGCTGACGTGTCAGTGGTGGACCTAACCTGCCGCCTGTCCCGGCCCGGCAGCTACGCTGAGATCAAGGAGGCTGTCAAGAAGGCCGCCGAAGGACCCATGAAGGGATACCTGGGGTACACTGAGGACTCTGTTGTGTCTTCTGACTTCATTGGAGACACCCACTCCTCCATCTTTGATGCTGGTGCCGGTATCTCCCTCAATGACAACTTTGTCAAACTCATTTCCTGGTATGACAATGAGTTTGGCTACAGCCACCGCGTCGCTGACCTGTTGCTGTACATGCATTCTAAGGAGTAACTGTCCGGCTCCAGAAAGCTGCAATGGGACCCACCCCCCCTTTTACATGCACTCACACCCTCCAGTGTCACACCCCTAGTACCCCCAGCCCTCCACCACTCTCTACAACACAACTTAGTCTCTGTAGTAGGCTGTGTGTACGAGTATTTGTTTTTCCCTTCATGAAAAAGTCCCACTTTGAGACTGTTTTGACTTGACAGTATGAGTTTCTGTGTCTTCCCAGAGCATTGCCGTAGATGTTTCCATACTGGCTGTTACCATGTAATGTTGGTGTTAAAGATTTCTAGTTTAAGAGTCAAGTGAGAAAGACAAGCTATTGTAactaaaaaaaataatacttcTGTAGAATCTTTACAAATGTCTTTGTCTTGCcttgttgttgttcatgtttcCTGTTTGCCAGTGTTATAAGAACATGTTTTCACACAATGGCAAATAAGTCGTCATCTGCATTCAAGATAATCAACAGGATGCAGAACATGAAGGTGATGCATTATAAAGTGACAATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260365 lncRNA upstream 1486 15297901 ~ 15298122 (+) True LOC110519929
TU260364 lncRNA upstream 17619 15281673 ~ 15281989 (+) True G227619
TU260360 lncRNA upstream 21246 15278072 ~ 15278362 (+) True G227615
TU260273 lncRNA upstream 22418 15276160 ~ 15277190 (+) True G227534
TU260270 lncRNA upstream 28339 15262273 ~ 15271269 (+) True LOC110519916
TU260561 lncRNA downstream 72246 15392149 ~ 15392775 (+) True G227800
TU260571 lncRNA downstream 76999 15396902 ~ 15441498 (+) True G227808
TU260616 lncRNA downstream 128613 15448516 ~ 15453530 (+) False G227844
TU260618 lncRNA downstream 128613 15448516 ~ 15453530 (+) True G227844
TU260619 lncRNA downstream 134642 15454545 ~ 15459630 (+) True G227845
XM_036970221.1 mRNA upstream 1485 15282905 ~ 15298123 (+) False LOC110519929
XM_021596783.2 mRNA upstream 28335 15249894 ~ 15271273 (+) False LOC110519916
XM_021596782.2 mRNA upstream 33063 15249912 ~ 15266545 (+) False LOC110519916
XM_021596785.2 mRNA upstream 86909 15204527 ~ 15212699 (+) True LOC110519918
XM_036964111.1 mRNA upstream 158147 15138558 ~ 15141461 (+) True LOC118944493
XM_036970248.1 mRNA downstream 460 15320363 ~ 15324017 (+) False LOC110519928
XM_021596799.2 mRNA downstream 460 15320363 ~ 15324018 (+) True LOC110519928
XM_021596789.2 mRNA downstream 8541 15328444 ~ 15332966 (+) False sult2st3
XM_021596788.2 mRNA downstream 9231 15329134 ~ 15332966 (+) True sult2st3
XM_021596792.2 mRNA downstream 52557 15372460 ~ 15390084 (+) False ncam3
TU260351 other upstream 55326 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 203695 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 301533 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 301533 14997159 ~ 14998075 (+) True G227405
TU260067 other upstream 308314 14990520 ~ 14991294 (+) True LOC110510950
TU260768 other downstream 368440 15688343 ~ 15696644 (+) True zgc:162160
TU261485 other downstream 1193600 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 1323448 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 1474796 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2975451 18295354 ~ 18296105 (+) True G230916

Expression Profile