RNA id: XM_021596789.2



Basic Information


Item Value
RNA id XM_021596789.2
length 2565
RNA type mRNA
GC content 0.42
exon number 6
gene id sult2st3
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15328444 ~ 15332966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTACAAACACTCCTTCCTTTCTTGTATTGGGTTTACTGCTCCTGCAGGGGCCATCCATCCCATCTCAAGCCCTTCTCTGGGTGATTCTGCCCTTGACAAAGACCCCATTGCAAGAAAGAGCTACAAGAGGGGGAGGGATTCTTTCCTCTCTCACATTTGAATTGATGCATTAAACATATGCCTCTACGTCAGGGCTGAACTGGCAGAACTTTACTGCAGGCTATACCTGAGTGTGTTCCATGGCATCAGACAGGTACTTTCTTCACCATGGAATTTTGTTACCAACTGTGGTTCACAATGAGGAGAGTCTGAAATATGCCAATGATTTCAAAGTTCAGGACAGCGATGTGTTTGCCATTACTTACCCCAAATCAGGTACCACATGGATGCAAGAGATTGTACCTTTAGTCCTAAATGGAGGAGACCTTACTCCAGTGCAAACTATTCCCAACTGGGACCGGGTTCCCTGGCTGGAGGAGACACGAGCAGCCCTAGTTCTGGACCGTCTGCCCTCACCACGGGCAATGGTCTCTCATATGCCCTACCATCTCATGCccccctccttcttcccctccAAAGCCAAGGTCATTTATGTTACCCGGAACCCAAAAGATGTTATGGTGTCATCATTTCACTTCCACAAGATGGCCAGTTTCCTGGATGACCCTGGGACTTTTGATGAGTTTCTAAATAAGTTTCTCTCTGGGCAAGTGTTGTTTGGGAAGTGGACAGACCATGTGAAAAGCTGGCGAAATTCAGATCTGGGAGACAGAATCCTATACATTACCTATGAAGAAATGATCAAGGACCTGCGGGGAGTGCTGGAACGCCTCTCACGGTTCCTTGGTCGGGACCTAAGTGAAGAAACTCTGGATCGTGTAGCCAACCACTGctgtttcagcaacatgaagTTAAATGCAATGTCAAACTACTCCCTGGTGCCACAGGAGATCATGGATAGCAGCAAGTCCACCTTCCTTAGAAAAGGGGTTGCTGGAGACTGGAAAAATCATTTCAGTCCTGAGCAGGATTTCAAATTCACAGCTGTCCTAAAAGAGGAAATGAACGGAACAAACATAAAATTCCCATGGGATGAGGAGTGAACAGGTGGAAATGTACCGACAACATTTTCTTGACATTGCAGGCAGTTAGACAGTGGAGAATTTAAAACAAATGGACTTTCTAAATGCATCTCTGCATCCACAGCACAAGTGTAATGTCACTTATGcatttattcattattatttttcaatcatttatttttctcgctctgcattgttgggaagtaagcatttcagtattagtctacacctgttgtttatgaagcatgtgacaaatacaattcgatTTGAAATGGTCCAAAAGTCCTGCTGCCACAGGAATGACTTGTGGTTAACTGGATATTTTGTAACTTTGTTAGTATTTTGATTGAACTCAGTGCTTGTTGGTTAAGTCAGACCGgctttcaaatcaaagtttattggtcacgtatACAGTTCTGCAGAtattatcgcaggtgcagcgaaatgcttatgtttctagctccaatagtgcagtaatatctagcaatacaataataatacaaGAACCTCCTGGACTATTCTTGTGTAGTTcttatttcacattttttaaatttttacatAAACAACTGGTAGTTGAATACATTTAAATTAGCCATAATCTGGTAATAACAGACTTATCATAAATAGTAAAATACTGTAAGTTATATTACACATTGTATACATCTGACCGTCACATGGTAGTGTGTTTTGTTTTTACTTACTGCTGAGGATTTGTCTAAAGGGTTGTGCTCACATAAAAAGTTTGACTTGCAGGCATAGTCTTCAGATGACAACAGTCCTAATGTAACCATAATAAGTTTCTTGTACAAAAACTTGAGGCTCCTCACTGAAACAATTTAATGAACATTTTCATAACAAGACATAGCAAGACAACCCTTTGGGGATCAGCATTCACTTTCCGGCTCTTGTCAGTTAGGAATCTCCTTATTGACTTCATGAACGATTTGGCATTGAACACATGGTTCGCAGAAAGCAGTCATACACCAGTCATCGCAAATGGTTCCCTGTAGAAATCAACATATTATTAGGGTGGCTAAGTTGATATCAACTTCTCACAGTCCTATGTCGTAGGCCTATAACGATCAGTCCCTAAGCCCTGACTAGCTCTGGCCCTGACAGGGTGAGGATGAGACAGATAACACAAAGGGCTGATTTACAAGACACGGATTacacctagtcctggactaaaaagcatggcCAATGGAGAATTCCCATTGAAATAGCATTTTTTTTCCCAGGATTTAGATTAATCTTAGTCCAGGACACCACCCCAAAGGGCTTTGTGATATGACGGAGTTGATGCTGGACAATGAATGCTGAATAGTGTGCATGGGGTAGTGGAGAAACAGGTCATGGAAATGTTCAACAATACATGAAGATGCATATCTATACAGCTGTACAATCAGCAACATGCCATATGCATACCTCTATGTTATACCTCTCCCGAATGCTGGTTCGCAACATAAAAtggttactacatca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU260374 lncRNA upstream 18273 15309221 ~ 15310171 (+) True G227629
TU260365 lncRNA upstream 30322 15297901 ~ 15298122 (+) True LOC110519929
TU260364 lncRNA upstream 46455 15281673 ~ 15281989 (+) True G227619
TU260360 lncRNA upstream 50082 15278072 ~ 15278362 (+) True G227615
TU260273 lncRNA upstream 51254 15276160 ~ 15277190 (+) True G227534
TU260561 lncRNA downstream 59183 15392149 ~ 15392775 (+) True G227800
TU260571 lncRNA downstream 63936 15396902 ~ 15441498 (+) True G227808
TU260616 lncRNA downstream 115550 15448516 ~ 15453530 (+) False G227844
TU260618 lncRNA downstream 115550 15448516 ~ 15453530 (+) True G227844
TU260619 lncRNA downstream 121579 15454545 ~ 15459630 (+) True G227845
XM_021596799.2 mRNA upstream 4426 15320363 ~ 15324018 (+) True LOC110519928
XM_036970248.1 mRNA upstream 4427 15320363 ~ 15324017 (+) False LOC110519928
XM_021596798.2 mRNA upstream 8541 15299608 ~ 15319903 (+) False gapdhs
XM_021596797.2 mRNA upstream 8541 15300653 ~ 15319903 (+) True gapdhs
XM_036970221.1 mRNA upstream 30321 15282905 ~ 15298123 (+) False LOC110519929
XM_021596792.2 mRNA downstream 39494 15372460 ~ 15390084 (+) False ncam3
XM_021596790.2 mRNA downstream 39495 15372461 ~ 15390084 (+) False ncam3
XM_021596791.2 mRNA downstream 39497 15372463 ~ 15390084 (+) True ncam3
XM_036970322.1 mRNA downstream 221784 15554750 ~ 15577232 (+) False rbm42
XM_021592776.2 mRNA downstream 233099 15566065 ~ 15577232 (+) False rbm42
TU260351 other upstream 84162 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 232531 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 330369 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 330369 14997159 ~ 14998075 (+) True G227405
TU260067 other upstream 337150 14990520 ~ 14991294 (+) True LOC110510950
TU260768 other downstream 355377 15688343 ~ 15696644 (+) True zgc:162160
TU261485 other downstream 1180537 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 1310385 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 1461733 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2962388 18295354 ~ 18296105 (+) True G230916

Expression Profile