RNA id: XM_021596792.2


Basic Information

Item Value
RNA id XM_021596792.2
length 3212
RNA type mRNA
GC content 0.47
exon number 15
gene id ncam3
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15372460 ~ 15390084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCATGATCTGAACCGAAAATGTTAAGGGGTGTGGATTTGAGCAGGGGAGGGCAGCATGCAGAGATTTTAGAGATTGTGGGGTCCCTGTCTGCCTCCCCGGTTCTCTCCTCTTGCCTATAAAAGCATGAAATAtatgtttccaccactgttgtTTTCGCGCGCAATTGCATGCAGCAGGTGTCAAGGACTACATCGATCCATTAATTGAGGATAGTGACAACGTTGAAGTAGAAATGGCTGAATCGATGCTCATCTTGAGAATGTGTTCCATAATGCTGGTCCTTGGTTTTTCAGAGGCCAAAATGGAAATCATCACCAGCAAAGCAGATTTGTTGCTGGGTGAGAATGCCATGCTCCTCTGCAAAGctggtggggaaggagacatCACCTGGCAGAAAGATGGAGAGGATGCTGAAGAAGACCAGATTGAGAAAGTGGATGAGACATCGTCAAAACTGTTAATCAGGAATGCCAAGATGGAGGATGCAGGACGGTACACATGCTTATGTGATTTTGACACCGgtcacagagatcatacatcttATACCATCTTTGTCTATGAGCGGCCATCCTTCGGGGAAACACTGGCCTACCATGAGTTCCTGGAGGGTCAAGATGTGGTCATCACCTGCATGGTCACTGGCAAACCGGTGGTGGAAGTCAACTGGGAGAGGGACCATGAGAAACTGCACTCTGAAGCAGGTCGGATCACAAAACTAAAAGACAACTCTCTAcagatcaacaacatcaacaggaAGGATCGAGGAACATATACCTGTGAGGCTAAAATCAAGGACCGGCCCATTTTCGAAAAGCTCGACATCTCCATCTCTGTCAACGTTCCTCCCACAGCGAAGATCCATGAGGAGGTGAAGAAAGTCACGGCCGGACCAGAGACCAATGTCTCCCTCAGCTGCCTGGTCGAGGGAGTCCCCCAACCGAACATCATCtggacagtCCCAGACTCTTCAGATGAGTCCCGCTACAAGTACAACTCAGACAAGAGCGAGCTCATTATCTCGTCCGTTGTCAGGAGCGACTACGGAGAGTACATCTGCACGGCCAAGAATAAAATCTCAGAGAGCAGTGCCATGATCATGCTGGATGTCTCAGAGCATCCTGTAGCAGTGCTGAGCCAGAAGAAGATGGAGCTGGAGCCAGGCCAGACTCTCTCAGTGTCATGTAACGTCTCAGGACACCCGATGCCCGCGCTGCAGTGGGTCAGGAAGACCAACAATGACCACCTGCTAACAGTGGACGCTGGTGGAGGTCGAGTGAGAATGGAGGATGGCTATGTCCTGGTAGTTGACAATGTGACGTCTTCAGATGGAGGGCTGTACAGCTGCATGGCTATCAGTCCTGCTGGCAACGCCTCCACAGACTTCAGCCTGCAGAcctggccAGGTAAAGCATCCCAGGTAAGTGGCACCCCAGGGCCCACATCGGTCCACTTCACCCTGGGGGCTTCCCTGGTGGACGGGGGCTCTCCCATCACCCACTTCACCCTCCAGTGGAAGACAGGACGTGATAACAATTGGGAGGAGAGAGTCATCCAGTCCACAGACCCCCTGGTTATCAAAGATCTGAATCCCTACACCACCTACTCTGTCCGGTTTGCCCCACAGAACCACCTGGGTCAGGGAGGCTTCTCCGAAGAGCTCACCGTCCGCACACAGGGCATACGaGGGGAACCAGACAGCCCGGTCCTGGTGGCAAGCGAGGGGAAGGTTGAGGGCAATATGTTCTCAATCCCTTTACCGCAGTTGAACAACGGAGGCTCCCCCATTACCCACTACACCGTCCGCTACAGAGTGaATAAGGTGGACGAGGACTGGAGGGAGAAGGACCTGCCGTCCAACTCGACAATGATCAACCTCCATGACCTGCAGTATAAATCAGACTACCACGTGGAGGTGCTCGCCGTCAACCCCTACGGCTCCTCCAGCCCCGCCAAGCTAAACTTCAACGTCCCACAGCCTGTAGCCAAGATGAATAAGGGTGGGATGGGGAAAGGGGCTGTGGCAGGCATTGTCATAGCCATCTTCTTGGCGCTATTGATCGCTGTGGACGCCACCTGTTGCTATACCAACCACTGCGGCATGCTGATGTTCCTGGCTGTCAAGCTGTTTGGGCAGAAGGTCCCTGGGATGAAGACTGTGGAGGAGGGGGACGGCACCTCTAATGGGAAGGCGTCCCCCAATGGAGATCCTGTCACTGAGGCCTGAGATACTGAACAGGAAGTGACATCCTAGTATCTGAAGAATGGAACCTGTAAATGTCAAAGTAGAAAGGAGGAAGTATTGTGAGTTGAGGGGTCTTAGTTAAATGTTTTTGGAGAGTTCCCAGGACAGTCCATGTTGAGAAAGGATAAGGATTCGGAAAGTTATCTGTGAACTGTAATGTCTAACATTGACAGATTGTTGTAATTTCATCCAGCCTTGTGTAATCTCCTGTTAAGTGTTACATTTCCTTGCTTTTATGTTTCAGTACATTCATGTTATATTTCAGTACATTCATGTTATATTTCAGTACATTAAGGCGGCTGTAAATTGTCAGGGAGACCTTCGTAGTTCATTAATTGAATCATAACTCATTATTTATTGAAGTCTATATTCACTTTAATCTGCAAAAAAATCTGTAAGTGACATATCATTATTTAATAAGGACATTTTATCCTAACATATTAACAATATAcagcagggctgcccaaccctcttacTGGAGATCtgctgtcctgtaggttttcagtcccaaccctaatttagcatatctTATTCAGCtggttaaggtcttgttgagcagctaattagtagaatcaggtgtgttaaatcagggttggactgaaaacccacaggacggtagatctccaggaagagggtggGCAGCcctgatatacagtatacagcatAATCACATTAACAAATAACAACGTGTCAAAATGACATCTCTTCAAGTGTTGTAATCATGCGGAATATACAGAGCTCATATATTACAGAGCTATATGATGTGCTTATTTTTAACCTAATCTGTTGTTAAATTGCAAATTGCTCATATAATAATTTTATGTTTGTATTTGTTTAATTATCCACTTTTTTACAGTTTCTTTTGTACATTGTACACTGTACATTGTttgtacatacacatacagtataacagctatgcattttgctatttaaaaaatgtgaaataaaaacatGCTGTTTTTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260374 lncRNA upstream 62289 15309221 ~ 15310171 (+) True G227629
TU260365 lncRNA upstream 74338 15297901 ~ 15298122 (+) True LOC110519929
TU260364 lncRNA upstream 90471 15281673 ~ 15281989 (+) True G227619
TU260360 lncRNA upstream 94098 15278072 ~ 15278362 (+) True G227615
TU260273 lncRNA upstream 95270 15276160 ~ 15277190 (+) True G227534
TU260561 lncRNA downstream 2065 15392149 ~ 15392775 (+) True G227800
TU260571 lncRNA downstream 6818 15396902 ~ 15441498 (+) True G227808
TU260616 lncRNA downstream 58432 15448516 ~ 15453530 (+) False G227844
TU260618 lncRNA downstream 58432 15448516 ~ 15453530 (+) True G227844
TU260619 lncRNA downstream 64461 15454545 ~ 15459630 (+) True G227845
XM_021596789.2 mRNA upstream 39494 15328444 ~ 15332966 (+) False sult2st3
XM_021596788.2 mRNA upstream 39494 15329134 ~ 15332966 (+) True sult2st3
XM_021596799.2 mRNA upstream 48442 15320363 ~ 15324018 (+) True LOC110519928
XM_036970248.1 mRNA upstream 48443 15320363 ~ 15324017 (+) False LOC110519928
XM_021596798.2 mRNA upstream 52557 15299608 ~ 15319903 (+) False gapdhs
XM_036970322.1 mRNA downstream 164666 15554750 ~ 15577232 (+) False rbm42
XM_021592776.2 mRNA downstream 175981 15566065 ~ 15577232 (+) False rbm42
XM_036970319.1 mRNA downstream 176086 15566170 ~ 15577801 (+) True rbm42
XM_036970308.1 mRNA downstream 188328 15578412 ~ 15619099 (+) False arhgap33
XM_036970309.1 mRNA downstream 188329 15578413 ~ 15619099 (+) True arhgap33
TU260351 other upstream 128178 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 276547 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 374385 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 374385 14997159 ~ 14998075 (+) True G227405
TU260067 other upstream 381166 14990520 ~ 14991294 (+) True LOC110510950
TU260768 other downstream 298259 15688343 ~ 15696644 (+) True zgc:162160
TU261485 other downstream 1123419 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 1253267 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 1404615 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2905270 18295354 ~ 18296105 (+) True G230916

Expression Profile