RNA id: XM_021592768.2


Basic Information

Item Value
RNA id XM_021592768.2
length 1161
RNA type mRNA
GC content 0.47
exon number 8
gene id upk1a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15628437 ~ 15631725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGAAGTAGACTACATTTAACAGAAAGCTGAGACAGGTGCTGAGCACAGCAGGCACAACAGAACGACAGCTGTTTGGTCAACAGAAAAAGATGCTCAGGGCCTGACATCACTGCAGGGGAGGAGCAGTGGGTTTAGAAGGAGCTGACAGAAGGACCGCTACTATGGCTGATGGAAAGGGATTCACCTGTCTTATGGTCATTCTCATCCTGGGGAATATATTTGGAGCTGCAGCAGGTCTTGCCCTTTGCGCTCTGGCCATCTGGGTTGCAGTAGATCAATTCAAGCTCTACCCTATATCTGGTGTGTCGGGGAAAGATGACATCTTTGCCGGGGCCTGGATTGCCATTTTCACAGGCTTTGCCTTCTTCTGCATGTGTGTCTTTGGTATCTTGGCTGCTGCGAAGAAGAGCCGTGCCTTAATGCTAACATATCTGATCCTGATGTTGATCATCTACATATTTGAGTGTGCCTCGTGTATCACTGCAGTCACCCACAGAGACTATCTGGTTGGAAACAGTAATCTGGTGAAGAAGCAGATGCTGAAGTACTATGCAGCCGACAGTGACTCTGGCAGTCGGATCACACTGACATGGAACAAAGTGATGAAAGAGGTGGAGTGTTGTGGAACGGATGGCCCAGTGGACTGGATAGAGTACAACTCCACCTTCAGGGAGAAGTTTGGTACAGACTACCCCTGGCCCACCCACTGCTGCAAGAGGAAGAACAACTACGAGGTGGTGAATGTGGAGGCCTGCAAGAATGGCCAGAACACCACCATGTTCACTAAGGGCTGCTTCAACCACATTGAGTCTGTGTTCAGTCGATATACATGGGCTATCAGCTGGTATGGTTTCGCTGTGCTAATGTTTATGTTCTGGCTGTTGATCCTGGCCATGGTGTACTACCTGATGCTGTGAGAAGTCTGGAGGTGATGTCTCTAACCATGTTTTATACTTTCTGCTGAAGCAACACCAACCCTCACTTCAGCAACTACCTCATTTCTTAAATAACAAATGACTGTGGGAATGATAACAGAAAAGTTTTCTGATATATAGAGAATGAACACTGTGTAGGGATTcaaatgtgtgtatatgtgtgtgtgtgtgtgtgtgtatatgtgtatatgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17347 UPK1; uroplakin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260856 lncRNA downstream 60492 15543333 ~ 15567945 (-) True G228051
TU260875 lncRNA downstream 61406 15566169 ~ 15567031 (-) True G228070
TU260852 lncRNA downstream 88219 15540013 ~ 15540218 (-) True G228047
TU260842 lncRNA downstream 90122 15536365 ~ 15538315 (-) False LOC110512327
TU260843 lncRNA downstream 90122 15536365 ~ 15538315 (-) False LOC110512327
TU260983 lncRNA upstream 82596 15714321 ~ 15714521 (-) True G228148
TU260985 lncRNA upstream 87097 15718822 ~ 15719083 (-) True G228150
TU260990 lncRNA upstream 92314 15724039 ~ 15724275 (-) True G228155
TU260993 lncRNA upstream 95374 15727099 ~ 15727343 (-) True G228158
TU260994 lncRNA upstream 96186 15727911 ~ 15728129 (-) True G228159
XM_021592782.2 mRNA downstream 88760 15536363 ~ 15539677 (-) False LOC110512327
XM_036970298.1 mRNA downstream 88777 15536363 ~ 15539660 (-) False LOC110512327
XM_021592788.2 mRNA downstream 88779 15536363 ~ 15539658 (-) False LOC110512327
XM_036970271.1 mRNA downstream 88779 15536363 ~ 15539658 (-) False LOC110512327
XR_005041212.1 mRNA downstream 88779 15536363 ~ 15539658 (-) False LOC110512327
XR_005041232.1 mRNA upstream 52247 15683972 ~ 15685054 (-) True LOC118946067
XM_036970409.1 mRNA upstream 169634 15801359 ~ 15817153 (-) True LOC110503794
XM_036964264.1 mRNA upstream 192353 15824078 ~ 15830026 (-) True LOC110503786
XM_021592693.2 mRNA upstream 221506 15853231 ~ 15861569 (-) True LOC110512120
XM_036970514.1 mRNA upstream 269173 15900898 ~ 15912729 (-) True LOC110503781
TU260901 other downstream 26949 15601015 ~ 15601488 (-) True G228094
TU260846 other downstream 90122 15536365 ~ 15538315 (-) True LOC110512327
TU259832 other downstream 991727 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 1103583 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 1103583 14523256 ~ 14524854 (-) True psenen
TU260907 other upstream 74509 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 155897 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1207664 16839389 ~ 16839839 (-) True G229373
TU262393 other upstream 1218247 16849972 ~ 16850199 (-) True G229380
TU262748 other upstream 1413300 17045025 ~ 17048344 (-) True G229707

Expression Profile