RNA id: XM_036970380.1


Basic Information

Item Value
RNA id XM_036970380.1
length 5032
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110503805
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15711043 ~ 15788655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAAATAAAACTATGCTTAATGTCTCCTTGCTGTACTGTGACTCTAGGTAGCCCCGATAATTTAAGAGTTTTAAACATTAATGTGCATGGAGCTGCGTCAACTCCGCTGCTATCGGAGTGTATCTCCACAGCCCCCCTGCGCTCTAATAGCTGTTGGAACAATCCGCATCGCAGGGTGTGGATCCGGAGCGGTCCAGAAAGGGTAGCCAGCACAGGGAGTAATAACGGGAGAGGGGCGAATATGAGTTAATGCTACCCGGGAAGAACACCACCTCGGAGGTGAATATCCTGCGAGAAAAATCTGAGGATTGAATGAAAATATAGTTAATTGTTTGACCTGGAGGTATCAAAGGCGACAGGAGCGTGAGGAGAGAGCATCGAGACACATACAGAAGCTCCGAATTGACTGCCAGCGAACGACTGCGTAGAAGACCGTATGAGAGGGAGGTGACAGTGTTGAAAAGTCTATTGCTTTTGATCATTTGGATCTACGGAGTAAAGTGTTTTGTTTTCAATGCACGTTTTTATTTTACTTTCGCGGGGATCAAGAATCACTTCCGGAAACCCACTTTATTTTTTGTTGAGCAGTCGCTACAGTTTTTGAATCAAAACTGACGAACAGACTCCAAAACTGGACTATTGTACTGTCGTCAATGTCTTGTCAGACGAGATACGTCaattaaaataattaaaatatTATCTGGGAGAGTGCGGACCGGATCTATTGCTATAAATATTATATTCAAGTATTTGACATTCTGTAGTTAACAAACAGCATTTCCCACCCAAGTGAACTggcgagagagaaggatacaTTGTTGCTGCGTATGAGGACGCGTTTCTGGCACATCAAATCAAAATTGAATATTCACTTTTTTTTTATCATCAAGAGATTCGCATTGACTCTACCTAGATCAGAGGCTTTGGAATAGAGAGCAAGAAACTGAAACTGACACTAAACACGGTTTTTACTTTTGTTGTGCCTTGGAATACACTTACTTGCACATGAGCACTTTGCTTTGTCATATTTATTTTTGCATGCACGTGTTTATTTCATCTTCCTGCACACGATAACATTTTTTCACAAGCTAAAGGTTGTTGTCACTCGTGTTTTTAGTTCCgtgtccctctcctcccacctctcgaCCTGGCCGCGCTTATTAAGGGCACCAGTTAACTGTGGACTTCGCTAGTTCCTTCAAGGGGGAAGGGTAGATTTTCATGTTTGTGCATCTGGTGGAGGAGACAAAGACAAAAAGCTTTTACTGTGGATGATTTATCTCTCTGAACTGTACCATTTATGTCACTGGATTAAACCACCAGGTTGAAGTCTGGGAAAGAAAACAGAACAGATGTTTTGGATTGCTTTCACCTGTTTGTTTTTTGACTGATTAGTTCACAATAGGATACTTACACGGAATCTAAGAGGCAAAGGCTATTTTTAGAGTGATGGGGTAAATGGTGGTAGTTGGAAATTGAGACCCCCACCCTCAGCCCAACAACACTTCCAGCTTTAGCTCTGGTTCCATTGTCAGCTGCTGAATTATCAAAACTGGAAATTCGAGTGGGGGTCCTGTCTCAGTCAAGCTCCCAGATATACATCTCACCCTGCTCAACTTCTTTTTATCTTTGACTGGAATTAAACTTTTTTTTCAGCACGGAGCAAGGAACAATGCATGAGAAACTGCACTTATAAGAAGCAAACTTGAGTAACCAAATATTTTCTTCCCCATATACACAGagaagcatatatatatatatatattaaataagaAATAGCTATGAATTATATAAGAATATGTAGTttaaataattatattatatttttacGTCAGAAATAAGCATTGTTGCCTGAAACCCAGTTCATTGCCTTAGAGAAACATAGTAATAAAGAATACAGAGGAAAGACGACGTGAAACTTTTTTGGAAACAAGTTAATGGTGCCTTTTTAGTTCCGTTGGTTCCTAATGTCTCCACCACTTCAGGATTGAATTGTTGACAAAGAAATATTTTTGTGTGAAACCCTTATATACCTGCCTTTCCGGTTCAAACCTGAGTTTTATTGTTGTTGGATGTATATTGCTGGATTGCATTGATTTCTGAAGAGTTCTGAGACGAGGATTACCCCTTCACTCTACACTTGATGCATCCTCATAGTTTTCCAAAGTAATTTTTGGAATCCCCAAATTATAAACTTTGACTTGATTTCTGGGATACAGCAGCCCAACACACAAGAGTTTCAGATGGTGATCACTTCGTCAGTGGAGGAGAAGTCGCAGCCTTCTAACAGAATGGTCGCAAATCTGCCGACCGAATCCTGGATCAACAACCCAGAGCAAAGTCGCTACTTACCAACTCAGTCACACCTACTCCGGAAACCGACAAAAAGTGGAAGCAGCTCAGGATGCAagcccccctcctctaccctctgccAGCCTGCCGCCTTGGGCTTCTCCCCCGCTGAGCCAACCATGTCGAGCCAGCACAGCCACCCCTCCTTCAGCAACATCCACTCCATGGCTGAACAGCAGCAGGTGCTGTCTGATGCGACCATACTGCAGAGGAGGATCCCCCCAAGTTTTAGAGATCCCGCCAGCGCACCGCTGAGAAAACTCTCTGTCGATCTGATCAAGACTTACAAGCACATCAATGAgGTGTACTACACGAAGAAGAAGCGGCGTGCCCAGCAGGTGCCCCCGGAGGACTCGAGCACTAAGAAGGAGCGGAAGGTGTACAACGATGGCTACGACGACGACAACTACGACTACATCGTCAAGAACGGGGAGAAGTGGCTGGACCGCTACGAGATTGACTCGCTCATCGGCAAGGGCTCCTTCGGGCAGGTGGTGAAAGCCTATGACCACCACGAGCAGGAGTGGGTGGCCAtcaagatcatcaagaacaagaAAGCCTTCCTGAACCAGGCCCAGATAGAGCTGCGACTGCTGGAGCTCATGAACAAACACGACACCGAGATGAAGTACTACAtagtCCACCTGAAGAGGCACTTCATGTTCCGGAACCACCTGTGCCTGGTGTTCGAGCTTCTCTCCTACAACCTGTACGACCTCCTGCGCAACACCAACTTCCGCGGCGTCTCTCTCAACCTGACCAGAAAGTTTGCCCAGCAGCTGTGCACGGCGCTGCTGTTCCTGGCCACGCCCGAGCTCAGCATCATCCACTGCGACCTCAAGCCCGAGAACATCCTGCTGTGCAACCCCAAGCGCAGCGCCATCAAGATCGTGGACTTTGGCAGCTCTTGTCAACTAGGCCAGAGGATCTACCAGTACATCCAGAGTCGGTTCTACAGATCTCCGGAGGTGTTGCTGGGCATGCCCTACGACCTGGCCATTGACATGTGGTCCCTGGGCTGCATCCTGGTGGAGATGCACACAGGAGAACCCCTCTTCAGCGGCTCCAACGAGgtggatCAGATGAATAAGAtagtggaggtgctgggggtcCCTCCCAACCACATGCTGGATCAGGCTCCCAAAGCACGGAAGTACTTTGACAAGCTGTCCGACGGTCTGTGGACCGTCAAGAAGAACAAGGACATAAAGAAGGTACTTTACCCCTCGGCCTCCGAGTACAAGCCTCCTGCGACGCGGCGGCTCCATGAGATCCTGGGGGTGGAGACCGGGGGTCCTGGCGGGAGGCGGGGCGGAGAGCAGGGGCACGCTCCCTGCGATTACCTGAAGTTCAAGGACCTGATCCTGCGCATGCTGGACTACGACCCCAAGACACGCATCACGCCCTTCTATGCGCTGCAGCACAACTTCTTCAAGAAGACGACGGACGAGGGCACTAACACCAGCAGTTCCACCTCCACCAGCCCGGCCATGGACCACAGccactccacctccaccaccagctCCGTCTCCAGCTCCGGTGGATCTAGCGGTTCTTCCAATGACAACCGGAATTACCGGTATAGTAACCGGTACTACAACAGTGCAGTTACTCACTCAGACTACGAGATGCAGAGTCCACAGGCTCCATCTCAGCAGCAGCTGCGCCTCTGGCCGGGTGGAGAGGGGGGCATGGGTCCCCTGTCCAACAGCGGCAGTAGCGTTGGCGACCCCCCATACCCCCAGCTGCTGCTGCACAAGCCGGCGGCCACCCAGCACTCACGCCACTTCCTGGGAGGCGGCGGCGTCGGGGGCATGATGGAACCCCACCACCCGCACCCCATCTACGGCGGTCACCACGGCAATGGGCGGGGCCTGCGGCAGACTGGGCAGGGGAACCAGCCCCAGGGCCAGGCTTCACAGGGCCAGCAGGGCCAGCCCCTGATGCCCATCTCCTCCCCACAGATGCCGGACAGCATCGAGCTCAGCctcacacaccaccaccatctgGGTCAGTCTTCCATCATGCCGCCCCCATCCAGCTTGGACTCCAGCCAGTACGGCTCCTCCAACCTCCACCTGGGCCTCTCTGCCTTTCGGACTAGGACGGTCATGGCCCCCCAGCCGCCCCCCGCCGGCTCCCAGCAACAGTTGGCTCAGCCCCCAGCCTCTCAGGACAGCTTGGTCGCTGCCTCCGGGCTTGGATACATCCCCCCATGCTACCCGGgaagtaacaacaataacaaccctCCCCAGGGTAGCGTGGTCGGGGGCGGGATGCTCACCGGGGGGCCCCCACCCAGGGGAGTAGGGGGCGGTGGGGGGAGGCCGGACTCTGAGGAGTCCACCATGATGGGTGTGTGCGGCAGTGGAGGAGGCGGTGGTCAGAACACGGCCAACTCTTGATAAATCTTGAACAAATTCCAAAAGCCATACAATTTTAACAACGACAACATTACAATTTcaacatgcatacatacacagtaTACACTCTTGAGTTTGGAACAAATACGGCCACACATACAGTTACAGAGACAAACTTGTGAAATATCACAggagttttgttttgttttgcatgGGAGAAGGtcgagggagagtgggagagtaagagagggagagtgggagagggagagtaagagagggagagtaagagagggagagtaagagagggagagtggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260810 lncRNA upstream 21138 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 49700 15711587 ~ 15712119 (+) True LOC110503805
TU260770 lncRNA upstream 58871 15652598 ~ 15702948 (+) True G227971
TU260760 lncRNA upstream 133100 15628428 ~ 15628719 (+) True G227962
TU260761 lncRNA upstream 133489 15626464 ~ 15628330 (+) True G227963
TU260831 lncRNA downstream 12706 15801361 ~ 15801855 (+) True G228032
TU260833 lncRNA downstream 26632 15815287 ~ 15817140 (+) True G228034
TU261085 lncRNA downstream 36649 15825304 ~ 15825708 (+) True G228223
TU261287 lncRNA downstream 377368 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 438251 16226906 ~ 16229345 (+) True G228451
XM_021592731.2 mRNA upstream 51582 15706305 ~ 15710237 (+) True fbl
XM_021592745.2 mRNA upstream 64422 15672260 ~ 15697397 (+) False zgc:162160
XM_021592753.2 mRNA upstream 117741 15636736 ~ 15644078 (+) False ppox
XM_036970346.1 mRNA upstream 117741 15636736 ~ 15644078 (+) True ppox
XM_021592762.2 mRNA upstream 125194 15632563 ~ 15636625 (+) True zmp:0000000951
XM_021592725.2 mRNA downstream 3189 15791844 ~ 15795523 (+) True zp3d.1
XM_036970414.1 mRNA downstream 10290 15798945 ~ 15801186 (+) True LOC110512192
XM_021592719.2 mRNA downstream 42178 15830833 ~ 15844953 (+) False LOC110512168
XM_021592714.2 mRNA downstream 42180 15830835 ~ 15844953 (+) True LOC110512168
XM_036970452.1 mRNA downstream 57565 15846220 ~ 15852719 (+) False LOC110512131
TU260768 other upstream 65175 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 517537 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 665906 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 763744 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 724848 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 854696 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 1006044 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2506699 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2781354 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile