RNA id: TU260706


Basic Information

Item Value
RNA id TU260706
length 533
lncRNA type sense_over
GC content 0.45
exon number 1
gene id LOC110503805
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15711043 ~ 15788655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGGGTCCCTTGCGAATGCACATCGCTAGTTATAGCGGTGCACCGGAAATACCCCAAATTTATTTTAAtcgtattttttattttatttaaacacTCATCCCCTCCACCTTTCCGTTCACCATAACATGCAACACGTAGTTGGATATTAGTAGTAACTGTTACAGTgaaagctagctagttagccagctaacgttagctagcctccCAGACTCAGCAGCTACGATAAACCCAACGTTGCCAGTTTGCTACATGGTTTCCTGAGTGAAAATAGAGGCCACGAAAGAATCAACAATCAACGGCGAGATACGGTCTATTTTGGATGACAACCTAGCCATTGCCATGCTACCCCAAGCGGTACCACCACATATGTTACCTGTGAACTGTTCAATTAGCTAGCTTGCACTGCGCCGGGCGGACGGTGCCGAACCTCCGAGTTCATCCTGCGCTCTTGCTGGACTGCGCTTTGGAGACTAACCTCACTGAAGACCCGAGTTTTGACGGGGATTTATTGCAAAAACGACACTACCCTCTC

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260770 lncRNA upstream 8639 15652598 ~ 15702948 (+) True G227971
TU260760 lncRNA upstream 82868 15628428 ~ 15628719 (+) True G227962
TU260761 lncRNA upstream 83257 15626464 ~ 15628330 (+) True G227963
TU260708 lncRNA upstream 170763 15540336 ~ 15540824 (+) True G227911
TU260677 lncRNA upstream 206202 15491365 ~ 15505385 (+) True G227881
TU260810 lncRNA downstream 28101 15740220 ~ 15740681 (+) True G228011
TU260831 lncRNA downstream 89242 15801361 ~ 15801855 (+) True G228032
TU260833 lncRNA downstream 103168 15815287 ~ 15817140 (+) True G228034
TU261085 lncRNA downstream 113185 15825304 ~ 15825708 (+) True G228223
TU261287 lncRNA downstream 453904 16166023 ~ 16166365 (+) True G228414
XM_021592731.2 mRNA upstream 1350 15706305 ~ 15710237 (+) True fbl
XM_021592745.2 mRNA upstream 14190 15672260 ~ 15697397 (+) False zgc:162160
XM_021592753.2 mRNA upstream 67509 15636736 ~ 15644078 (+) False ppox
XM_036970346.1 mRNA upstream 67509 15636736 ~ 15644078 (+) True ppox
XM_021592762.2 mRNA upstream 74962 15632563 ~ 15636625 (+) True zmp:0000000951
XM_036970377.1 mRNA downstream 49699 15761818 ~ 15788655 (+) False LOC110503805
XM_036970380.1 mRNA downstream 49700 15761819 ~ 15788655 (+) False LOC110503805
XM_036970383.1 mRNA downstream 49700 15761819 ~ 15788655 (+) False LOC110503805
XM_036970390.1 mRNA downstream 49701 15761820 ~ 15788655 (+) False LOC110503805
XM_021592725.2 mRNA downstream 79725 15791844 ~ 15795523 (+) True zp3d.1
TU260768 other upstream 14943 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 467305 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 615674 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 713512 14997159 ~ 14998075 (+) False G227405
TU260123 other upstream 713512 14997159 ~ 14998075 (+) True G227405
TU261485 other downstream 801384 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 931232 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 1082580 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2583235 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2857890 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile