RNA id: XM_036970414.1


Basic Information

Item Value
RNA id XM_036970414.1
length 2066
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110512192
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15798945 ~ 15801186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGAAGAGATCAACAACTCCACATTGCTGTTGCCTGGTGTCAGCCTGGGATATGAGATTTTTGACTATTGCTCTGACTTGCTCAGTTATGGGGCTGCTCTGGACTTTCTGACCCAAAAGGGAAGAGGAGGCATCCCCGTGTGGAACGGTACAAACTACAGACCTAAAGTCATCTCAGTCACTGGCCCGTTTGGAAGCAGCCAAACCATCAGTGTCGCCCCTCTGTACATGTCTGAGATGATTCTAATGGTGACTCATGGGGCATCAAGTGTCTAACAGAGCTCCAAAAACAGATTTCCCTCCTTTTTCCGAACTATTCCCAGCGACAAATATCAGGTGGAGTCTATAGTCCGTATACTCCAACAATTTAACTGGAACTGGGTGGCTTTCATCGGTGGTAATGACTACAGCAGAGATGCCTTGACAGTTTTTCAGGATAAGATTAGACCAGCTAACATCTGTTTGGCGTACCAAGGCACCGttccccaaaaccaatccttaatAGGGCGTCTATTCAACAACATAGCCATGTTCAATGTCCAGGTTATTGTAGTCTTTGCCAATGTGGAGTTTGTCATTCCTTTCATCCAAAAGGCCATAGATCTCAGAGTGAAGGAGAAGATATGGATCGCTAGTGAGACATGGTCCAACAGGTCAAATTCAAATTGGACAATCAAAGTATAGAGATTGATGAGAACGGGGACCCACCGGCTCATTACGACATTGTACACTGGGactgcaaaaataaaatatgttctAATGTGGACATTGGCTCATACCTTACCAACCCCACACCAAGCTTCCACATTAATGCAACTCTCATACATTGGTTTGAGGGCACAAAGGTTAGTACTTCTTCAAACTGGCTTCCACACCTGCTGTTTTGAGTGTGAGATCTGCTCTGATGGAAAGTACATCAACCACACAGGTACTGAGCAACATTGTTTttgcctggagtttttccttgaCAGGTCAATCCGTCAGAAAGAACACCTGGCACCATTTATTACCTATGAATCACATGACAAAAATTGTTATCTGTACACATATTAGAATCTGTCACCCagttctcttcccttcctctcccaacAGCCGATCCCTACAGCTGCATAGAATGCAAAAGGATGAGTGGGCCAGGAATGGCAGTACCTCATGCACTAAGCGCTCTATAGAGTATCTGCATTCTGATGCTCCATTGGCCATTTGTCTGATGTTCCAGGCCATTTCCATCATCCTCATCTCAATTACCATCTTGGTTCTGTTCCTTTGTAAGCATGACACCCCTGTGGTAAAGTCAGCCGGTGGGAGGCTCTGCttcttcatgttgtgttgcttgtCCATGTCCTCCTCCAGCGTCTTCCTCTACATCGGCAAACCCACAGAGGCCATCTGCACCTTACGCAATTCTGTGTTTATAGTCTTCTATGTGGCCTGCCTGTCCTGTCTTGCTGTTCGCTCCTTCCAGATTGTCTGTATCTTCAAAATGGCCGCCAAACTGCCCAAAGCGTATGATTTCTGGGTCAAGCATGGTGGTCAGTGGATCACTATTATCACAACCACTGTCATAATGCTGTTTCTGTGCATTTTGTGGATAGCCATTGAAGGACCCAAGCCCAATCAGATAACATTGTATAGCGAGGTAATTTTGGATTGCACATATGGAGTCATCCCCATCTTTTATGGGATAGTACTGTTTGCCGTTTTGCTGGGTATTGCATGCTTTAGTTTTGCCTACATGGGAACTGACCTGCCCAAAAACTACGAGGGTAAATCTATCACTTTCAGCTTGCTTATCTTCTTCATCTCTTGGGTCATCTCTCTGACGGTGCACCTGTCCACCAAAGGAAAGCACACACTCTCCGTCAATCCTTTCTCTGTGCTGTGCAGTCTGTATGGTCTACTCTTACCTAAATGTTTGGTTACTTCTTCCCTAAATGGTTACTTCTTCCCTAATCATTATCATTACACCTGAGCATAATACAGCAGCCTATTTTCAAACTGCAATCCAGAGTTACACACTTCAACCTAGATAATGTACAGATGTTGAGACATATGACTTGTGTTGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260810 lncRNA upstream 58264 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 86826 15711587 ~ 15712119 (+) True LOC110503805
TU260770 lncRNA upstream 95997 15652598 ~ 15702948 (+) True G227971
TU260760 lncRNA upstream 170226 15628428 ~ 15628719 (+) True G227962
TU260761 lncRNA upstream 170615 15626464 ~ 15628330 (+) True G227963
TU260831 lncRNA downstream 175 15801361 ~ 15801855 (+) True G228032
TU260833 lncRNA downstream 14101 15815287 ~ 15817140 (+) True G228034
TU261085 lncRNA downstream 24118 15825304 ~ 15825708 (+) True G228223
TU261287 lncRNA downstream 364837 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 425720 16226906 ~ 16229345 (+) True G228451
XM_021592725.2 mRNA upstream 3422 15791844 ~ 15795523 (+) True zp3d.1
XM_036970397.1 mRNA upstream 10290 15711043 ~ 15788655 (+) False LOC110503805
XM_021592719.2 mRNA downstream 29647 15830833 ~ 15844953 (+) False LOC110512168
XM_021592714.2 mRNA downstream 29649 15830835 ~ 15844953 (+) True LOC110512168
XM_036970452.1 mRNA downstream 45034 15846220 ~ 15852719 (+) False LOC110512131
XM_036970456.1 mRNA downstream 45052 15846238 ~ 15852719 (+) False LOC110512131
XM_021592702.2 mRNA downstream 45055 15846241 ~ 15853237 (+) False LOC110512131
TU260768 other upstream 102301 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 554663 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 703032 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 800870 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 712317 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 842165 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 993513 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2494168 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2768823 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile