RNA id: XM_021592714.2


Basic Information

Item Value
RNA id XM_021592714.2
length 4395
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110512168
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15830833 ~ 15844953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTACGCTTGATAATAGCACCTGCATATAACAACGGCCAGTATTTCCCCGGATTGTTACTGTAATGGGTGTTGTATCGAACACCGAGACAGACAGGATGTGGAGCTGAAAGAAAGAAGGCGGAGAATAGTTCAAAGTCGCTGGAAACATTGTCGCAAAATCCGAAAGGATTGCAATGGAACGATTACCTTTATTTAGAATAAACTAATAACGAAAGGGACCCCAGCAAGCCTAGAGGAATGTAGATGAAGAGTGATTCGGCCTCCAACATAAAGTTATCCCTCCACTGAACCAAATAGGGCTGTTTATACACAAAGAGTTTAGCCTAGCAACCGGCTGCCACCATGATGATATCCAGGCTGGTCTGGGTGTGCCTGGCACTGATAGGGGCGAGGAGCTGCCACGCCCACAGTCTATTCACCTGTGAACCCATCAAGGTGCATCGCTGCCTGGGGATGCTCTACAACATGACTTTCTTCCCCAACATGATGGAGCACTATGACCAGGACATAGCAGCCAGCAGGATGGAGCCCTTCATGCCGCTGGTCAACCTGCGCTGCTCTCCGGACGTACATCACTTCCTGTGTCAGGCCTTTATCCCAGCATGCACTGAGGACACCAAAGTGATCCGGCCATGTCGCGACCTGTGTGAGAAAGTGAGGTCAGACTGCAGGAAGGACATCAGCACCTTCGGCATCACCTGGCCTCCGGAGCTGCAGTGCGACAGGTTGGAAGATTGCCTCTACTCTCCAGATGGCTCAGTCCTGCCACCAACCAGAGTGACCACACCCAAGACCTCTCTGTCTGCCAAGAGGGACATGGGCTTCTGGTGCCCCCTTCAGCTGAAGACCCGACCCGGCCAGGGATCCACGTTCCTGGGTGCCGGGGACTGCGCTCCCCCTTGCTCCAACATGTACTTCAAGCCCCATGAAATCGAGTTCGCCAAGACCTTCATCGGGGTGTGCTCCATCGTCTGCCTCTGCGCCACGCTCTTCACCTTTCTCACCTTCCTCATCGACGTCAAACGCTTCCGCTACCCCGAACGGCCAATCATCTTCTACGCCGTGTGCTACAGCTTCGTGTCGCTCATCTACTTCATCGGCTTCCTGCTGGGGAACAATGCATCCTGCAACAAGGCGGTGCACCCGGCTGCCATGGACACGGTAGTGCTGGGCTCCCAGAGTAAAGGCTGTACGTTACTCTTCATGCTACTCTACTTCTTCTCCCTGGCCGGCATCGTCTGGTGGGTCATCCTCACCATCACCTGGTTCCTGGCCGCCGGGCCCAAGTGGAGCTGCGAGGCCATCGAGAAGAAGGCGGTGTGGTTCCACTCTGTCGCTTGGGGGATCCCCGGAGCACTAACCGTCATGCTACTGGCTCTCAACAAGGTGGAGGGAGATAATATCAGCGGGGTGTGCTTCGTGGGTCTCTATGATCTGGACGCGCTGCGGTACTTTGTGCTGGCGCCACTGTGTATCGGGGTTGTGGTTGGGCTGTCTCTGCTCCTGGCTGGGATTGTGTCGCTCAACAACGTGCGTCAGGTGATCCAGCACGATGAGAGGAACCAGGAGAAGCTGAAGAAGTTTATGATCCGTATTGGGGTGTTCAGTGGTCTGTACCTGGTGCCCCTGGTCACTCTGCAGGGGTGTTATATCTATGAACAGAGCCAGCGCTCCACCTGGGAAAACACCTGGATCAATGACCGTTGCCAGGAGTACAGCATTCCCTGCTCACACAAGACTACAGAGTCTGGTCGTCCAGACCTGTCCCTATTCCTAATTAAATACCTGATGACCCTGGTGGTTGGGATCTCAGCTGTGTTCTGGGTCAGCAGCAAGAAGACCTGCTCAGAATGGGCCTTCTTCTTCAACAGGACCAGGAAGAAAGACCCCATTAGTGAGAGCCGCAGAGTTCTCCAGGAGTCCTGTGAGTTCTTCCTCAAACACAACAGCCGTGTCCAGCACAAGAAGAACCACTACAACCCCGGCTCCCACAAACTCAAGGTCATCTCCAAGTCCATGGGCACCAGCACTGGTGCCTCAGCCACAGGCAACCACGGCACCTCAGCAGTGGGCAACCATGAGGCCATCCGGGGACAGGCTTCTTTCTCAGAGGCCAGGGGCTCATCTGAGGCCTCCGCCAGGGAGCAGCTGGAGAGGGGCAGCTCCACCCGTGGCTCCaggctgagggagagggagaagcagcCCAGTGGACAGGCCCTgtctggggggagagagggggcagagagacgtAGTAAGAAGGGCAGCTCCAGCAAGGTTAGCAGCCGCTCAGAGAGCTTCCACAGAGTCCCAGAGGGAAGGATGACTCCCCGGAGTGAACTATCAGAGACGAGACAGATGCCCAGTGGACAGCACCTGGCTTTAAGCCACTCCCACAGCGGCAGTGTGAAAGGCTCCGTCCCTCACCTGGTTCGCCAGTTACCAGAGGAGAAAAAGGACAAGGACAGCAGCTGTTGAGCCCAACCAGCAGGCTCCTATGATACTTAACACCAACAAAGATGGGGGACTCTGGTCCTCAGGGGCTGGActgagtgtctgctggtttttgttcTGTTCTTCCTTTCAAATGAGCAACTGATTTAACCTGTCATACCATACCAGATGTGTACACTTGGAACAATCAGTGATATTAGTGGATCGATTCAGTAcctgagggagaatagagagttgAGAAAATCCAAAGGACAGGAGTTTTCCTTCACACCACAGAGACGGGAAGGAAGAGACTAGGTGGGCCACCAAGGTCCTAGAGTTCCCTTCAGTGACCGACCCAACAGGTGTAGCTACTGTACATCAGTCAGCTTGACTGGATCACTGGACACATCAAGGTGAATGAGGTTAGAGAATCATGCAGCTCTTCAGACCAACAGTTGCATTTCCCTGCTGTAAAACAGTCACTTCGGTTGACATATTGTTTATTTACTTATGAAAGCTGTACTTTTCTGAGGGTAGATTGATATGTAAAGTGTGTCGAATATACACTGGCAATATTTATGTAAACTATTTTATTTTCTATCACTGGACTAGTCTTTACACTGAGTTTAAGCGCTTGAAAATCTGAAAATCGTGAAGGTTTCACCAAACAATCAGAACTTCAACAATATCTAGCTGTGGTGGTtaactctttttattttatttttgtattcaaATGGTTAATGTCATGTATATGTAGACAATTCCATCATGAAACAATGAGAAGCAAGCATAGCAGTTCTGTAGTTAAAGTAATTGCAGTAGACAGGAGGTTCTCACTACCAATACAATCAGTATGCTACTCTACTTTTCATTCCTTTTCCATTAGTGTTTTTCAGTATCTCTATAAATAGTTACATAAGCATTTTTCAATTTGCTGACTCTCGTCATTAACTTAATTTCCAGTAAATCTTAGTGGAGCATGTGTTTTTTTTATACTACAGTTTCTAGAAGAATGTGCCTTGTGAACTAAATCATGGTTTTCAGATAACCTACTTTTTGTCTGTCTACCTACAGATGCTTTACATGTGTGACAGTCATTCCATGTGCGTATTCATCTCCAGTGAAATATGTGGACAAAGTAACCAGGCTTATTTCTGGCTCTTGACCTTATGTAAGTTGTTGTGGTTGGACATCTCACTACACTAGAGGAGTTACCACTTAGAGATGAACCCAGTGCAAATACTGAGTGATACTGTACAATTTGTACAGAGATCGAATGTCTTTTTTTGGAGTTTATATTTCTGTTACGCAATTATCGTTAAACCAAATATAGTAGTATGTATACCTAACATAACTGATGATACAATATGAAAACACCAGTAGAAAAAATCAGAGACGAAATCCAATCCAAAGCATGTACCTAGTTGAGttgatatttttttacaaatgtgtGGGTTTTGTTCAGTATTTCAATTGTCATGATTCTTACCGGTAATCCATGAATTGTGTTTGACAGTACACATTTTCCTTGCAAGCATTTTCCCGAAAGGCCTGTTGGGAATAAGTCTTGTACACTGTATTAATACATCCATACATACTCACAATCATTTGATAAGTATTTGAATCCCTCCCATGCTGAATTGTTTTATTGTCTTTAATCTGACCCTGTCCTTGATCTTCATCCATATCTATTGTATATGATTATGTGGCTATCAGAAGACAAAGGTTCCAGCTAAAGGGAATGTGTTATCTTGCTTCCACTCCTTCACAAATGAATAATATAACCACTACTCATCCTTGATTGGTTGACTTGTTTAGGCTAtacattttttgtatatatattttaaattcccTATACATTTTTGTGAACTTTTGTAGTCTTATGTTGTATGTACTATTTGATATATATTTTGTATCAATTATATTTCCTTTTAATAAAAGATTAttgaatcaaataaaa

Function

GO: NA

KEGG:

id description
K02376 FZD6; frizzled 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261085 lncRNA upstream 5127 15825304 ~ 15825708 (+) True G228223
TU260833 lncRNA upstream 13695 15815287 ~ 15817140 (+) True G228034
TU260831 lncRNA upstream 28980 15801361 ~ 15801855 (+) True G228032
TU260810 lncRNA upstream 90154 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 118716 15711587 ~ 15712119 (+) True LOC110503805
TU261287 lncRNA downstream 321070 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 381953 16226906 ~ 16229345 (+) True G228451
TU261600 lncRNA downstream 846591 16691544 ~ 16693504 (+) True G228707
TU261607 lncRNA downstream 857699 16702652 ~ 16702864 (+) True G228711
TU261611 lncRNA downstream 862206 16707159 ~ 16734495 (+) True G228715
XM_036970414.1 mRNA upstream 29649 15798945 ~ 15801186 (+) True LOC110512192
XM_021592725.2 mRNA upstream 35312 15791844 ~ 15795523 (+) True zp3d.1
XM_036970380.1 mRNA upstream 42180 15761819 ~ 15788655 (+) False LOC110503805
XM_036970452.1 mRNA downstream 1267 15846220 ~ 15852719 (+) False LOC110512131
XM_036970456.1 mRNA downstream 1285 15846238 ~ 15852719 (+) False LOC110512131
XM_021592702.2 mRNA downstream 1288 15846241 ~ 15853237 (+) False LOC110512131
XM_021592710.2 mRNA downstream 1314 15846267 ~ 15853237 (+) True LOC110512131
XM_021592684.2 mRNA downstream 16666 15861619 ~ 15864453 (+) True LOC110512109
TU260768 other upstream 134191 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 586553 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 734922 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 832760 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 668550 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 798398 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 949746 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2450401 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2725056 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile