RNA id: XM_021592710.2


Basic Information

Item Value
RNA id XM_021592710.2
length 1291
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110512131
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15846220 ~ 15853237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGTAAGTGAAATGTTATTTCCCGCCCATGACAACTTCTGAGTAGGTCCAGACATTTAACAAACTTTAGCGGCAAAAACTCATAAATCATATGCTATGCGAGAACACATTTACAGGCAGAGCATAGGCGCGCTCTAAATTTCCCTCATCCCCACTCACTTGAAATACGGCGCAGCACAGCAGCAGGGAATCCTTGCCGTGGTCTCTCTCGATCTTTTGGGAAAATAAAAGATGGTATCAGCTCTAACTCGTCTGCTGCTCCTCACCTGCGTGATTCTACCTTTCAATGGAGCAGAGAAATTGAGAAAGGCACTTGACAGGAAGGATGTTGAATAcgaaaagTACAACAGCTGCCCCCGGGGTCCGGCTGGCACCCCTGGAAGGGAGGGTAACCCTGGCACCAATGGCATCCCTGGGACTCCTGGCATCCCGGGGCGCGATGGCATcaagggggagaaaggagagtgtgtgagtgaggtgTTTGAGGAGCCATGGAAACCCAACTACAAGCAGTGTGCCTGGAACTCACTCAACTATGGGATCGACCTGGGCAAAATAGCTGACTGTACATTCACCAAGCTGCGTTCAGACAGTGCCCTGCGTGTGCTCTTCAGCGGCTCCCTGAGGCTGAAGTGTAAGACAGCCTGCTGCCAGCGTTGGTACTTCACCTTCAACGGAGCTGAGTGTACAGGACCTCTGCCCATCGAATTCATCATCTACCTCGACCAAGGGAGCCCTGAGCTCAACTCCACCATCAACATACACAGAACCTCATCTGTTGAAGGGTTGTGTGAGGGGATCCGGGCAGGCCTGGTGGACGTGGCTATCTGGGTGGGGACCTGTGCTGACTACCCCAGAGGAGACGCATCTACAGGGTGGAACTCTGTATCCAGGGTCTTCATAGAGGAGCTGCCCAAATGAGGCCTTCTTTATTAAGTGATGGGACCAGGCCCCATAGAGAAAGAACCCCTAACAATACTTCTGAAGCCTTTGACTACATATCAGTTTAGTTTCTGGATGGGTTCCTAGTCTTTGACAATGTCCTCTGGCCAATCAAACAACTTCAGTTGTGGCTAAATCCTACTACAATATCACTGATGTTCACTTGAATGTTTTGTACTACAGCACCTGGGTAGGGTCTAGTTTATTGGCCACCTGAAATTAGATTTATTCCTCATTAGTCCCATTCCTGTTTAATAAAGGAAAGATTTTGGCTGTGCATGTAATCTGTTGAAGTCGTACATTTTTAAATGAATTACTGTCAATAAAGTAATATTTTGTATGAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261085 lncRNA upstream 20559 15825304 ~ 15825708 (+) True G228223
TU260833 lncRNA upstream 29127 15815287 ~ 15817140 (+) True G228034
TU260831 lncRNA upstream 44412 15801361 ~ 15801855 (+) True G228032
TU260810 lncRNA upstream 105586 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 134148 15711587 ~ 15712119 (+) True LOC110503805
TU261287 lncRNA downstream 312786 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 373669 16226906 ~ 16229345 (+) True G228451
TU261600 lncRNA downstream 838307 16691544 ~ 16693504 (+) True G228707
TU261607 lncRNA downstream 849415 16702652 ~ 16702864 (+) True G228711
TU261611 lncRNA downstream 853922 16707159 ~ 16734495 (+) True G228715
XM_021592719.2 mRNA upstream 1314 15830833 ~ 15844953 (+) False LOC110512168
XM_021592714.2 mRNA upstream 1314 15830835 ~ 15844953 (+) True LOC110512168
XM_036970414.1 mRNA upstream 45081 15798945 ~ 15801186 (+) True LOC110512192
XM_021592725.2 mRNA upstream 50744 15791844 ~ 15795523 (+) True zp3d.1
XM_036970390.1 mRNA upstream 57612 15761820 ~ 15788655 (+) False LOC110503805
XM_021592684.2 mRNA downstream 8382 15861619 ~ 15864453 (+) True LOC110512109
XM_021592670.2 mRNA downstream 14018 15867255 ~ 15878522 (+) False LOC110512078
XM_021592671.2 mRNA downstream 14052 15867289 ~ 15878522 (+) False LOC110512078
XM_021592673.2 mRNA downstream 14124 15867361 ~ 15878522 (+) False LOC110512078
XM_036970491.1 mRNA downstream 14125 15867362 ~ 15878522 (+) False LOC110512078
TU260768 other upstream 149623 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 601985 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 750354 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 848192 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 660266 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 790114 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 941462 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2442117 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2716772 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile