RNA id: XM_036970480.1


Basic Information

Item Value
RNA id XM_036970480.1
length 1585
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110512078
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15867255 ~ 15878522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATAATGAAGTAGAGCGCCAAATAGACTGGTATTTTTGTTATGTGCACATGGATAGCCAGCCTACAGTCGGCTCGGGTGGCTGCCGAACCTTCGCTCCGATTGTAAACAACCTGCGTTCATGACGAAATGTGGCCTAGCCTATGCGGCAATGTGCACTTTCCCACTACGGAGTGTGACACGCCAGGAGCAAGGATGTCATACGGGAGAACAGACAGCTACCACTCGCAGCCGCGAGACTTCAGCAACCTCACCCAGACATGCAGTgtcaacatccagaaaatcacacagAACACTGGGCAGATCAAAAACATGCTGTACCAGATGGGGACGAGGCAAGAGACGCCAGAGCTGCAGGACAGACTCCAGCAGGTACAGCACTACACCAACCAGCTGGCCAAAGAGACCAACAGACACCTGAAAGATCTGggctccctgcctctccctccctctgaacAGAGACAGCAGAAGATCCAGAAGGACCGACTGATGAATGACTTCTCTGCAGCGCTCAACAACTTCCAGGCAGTCCAGCGACGGGCGGCCGAGAAGGAGAGGGAATCCGTGGCCAGGGCCCGGGCCGGGTCCCGCCTCACACAGGAAGATGAGGGGAACGTCGATGAACAACTTGTTACATTTGAAAAagatgaTGATGACTGGAGTCAGAGTCAGACCCAGCAGCTGGAGGAGCCAGAGGTCACAGAGGAGGACCTGGAGGTCatcaaggagagagagaccaacatcAGGCAGCTAGAGTCTGACATCATGGATGTAAACCAGATCTTTAAGGACCTGGCTGTGATGATCCACGACCAGGGAGAGATGATCGACAGCATTGAGGCTAACGTGGAGAGTGCAGAGGTCCATGTAGACAGAGGGACCGGACAGCTCCAAAGGGCCGCCTACTACCAGAGGAAGTCCCGTAAGAGGATGTGTATGCTGGCCATGGTGGTGTCTCTGGTGGTCACCGTCCTGGCTATCATCATCTGGCAGGCCATCAaatgagaggacaggaagagCACTGGGGAAGGATTTTAAGGGTACATCGCACTGACAGCCTAGAATGGCTTCCAATGGAACGTctgagtgagtgaatgtgtgtgtgtgggggcacgGGTGTGCACGGGCGTGCTTTCAAGCAAGATATAGACAGAGGCGTAAGGAATAGATTGTATAAATTCTCTTCCCCatctgtatatattatatactaACTGTTCTAACACAGCCCTGCACTTCCATGTCAGAAATACAAATCATCTCTGTCATCATTACATACATTACTGTGTTAGAATATGTCTGATCTAATGCAATATTGCACAAGTTTGTATGTATATAAATGCCATGGGTACGGTTTGATATGGTTTATTTTCTGCCTCCCTATTCTCTTCATGTTGTAAATGTCTGATTCTCATCCAGATGTCTTATAGTCTATAGTATTACCACAAGGACATGATGTAGTTGAGATAAGGAAGAGTCCTTTGATAGCacacaaacaacaaacaaaatgTTTGTATTAttactatgattattattatgattattattatgctCACTTTCATTAATAAAATCAACTGTGCAAAAAGTC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08488 STX7; syntaxin 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261085 lncRNA upstream 42348 15825304 ~ 15825708 (+) True G228223
TU260833 lncRNA upstream 50916 15815287 ~ 15817140 (+) True G228034
TU260831 lncRNA upstream 66201 15801361 ~ 15801855 (+) True G228032
TU260810 lncRNA upstream 127375 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 155937 15711587 ~ 15712119 (+) True LOC110503805
TU261287 lncRNA downstream 287501 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 348384 16226906 ~ 16229345 (+) True G228451
TU261600 lncRNA downstream 813022 16691544 ~ 16693504 (+) True G228707
TU261607 lncRNA downstream 824130 16702652 ~ 16702864 (+) True G228711
TU261611 lncRNA downstream 828637 16707159 ~ 16734495 (+) True G228715
XM_021592684.2 mRNA upstream 3603 15861619 ~ 15864453 (+) True LOC110512109
XM_021592702.2 mRNA upstream 14819 15846241 ~ 15853237 (+) False LOC110512131
XM_021592710.2 mRNA upstream 14819 15846267 ~ 15853237 (+) True LOC110512131
XM_036970452.1 mRNA upstream 15337 15846220 ~ 15852719 (+) False LOC110512131
XM_021592665.2 mRNA downstream 7503 15886025 ~ 15888715 (+) True LOC110512064
XM_021592653.2 mRNA downstream 10597 15889119 ~ 15898210 (+) False bves
XM_021592659.2 mRNA downstream 10597 15889119 ~ 15898210 (+) True bves
XM_036970535.1 mRNA downstream 60927 15939449 ~ 15971189 (+) False hace1
XM_036970525.1 mRNA downstream 60927 15939449 ~ 15973343 (+) False hace1
TU260768 other upstream 171412 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 623774 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 772143 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 869981 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 634981 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 764829 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 916177 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2416832 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2691487 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile