RNA id: XM_021592665.2


Basic Information

Item Value
RNA id XM_021592665.2
length 2020
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110512064
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15886025 ~ 15888715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTCTGAAAACAGAGAGATCAAGGAGTGGGaaagacacacagatacagacacacacacatacacaacctctCATTAAAGTTGAGCTTTTTTATCCACCCTACTCACCTTTACACCTATAACAAGTAGTGGAAGTGTTACAGCCCTACTGAGTTGTTGGAGACCACCTTCTGTCAGAGACCTTGGAGGCTTGTCATTCATCATCACAATCTTCTCTTGATCAGGCAAATTCATAACCCCATCATCACAGTATATGTTTAGTGAGTTTGAGAATTATCTGAGATTTGCATTGAAAGGTAAACATGTTAGGCCTACTTGGTGTTGTTGTGTAATGTCATTTGCTCAGGCTGTAATTTGTTGAATGAGTAATTTGATATCCATACATCTTATATCTCAATATCGCATTTCAATTATTGGATATATCCTAGACGTCATGTGCATAGAAGATATGGTTTGGTTGAGCCCGATAGAGCTTTAATCAGTTGGATGTCAGGACCAAGCGGAGCAGTAGGCTCCTTAGCCACCCCCGTCCCGATACCCGGGTCATATTTTAAGAGGTGATATCATCAAAACTTAGGGCGATTAAATGTTAGGGTGGAAGTCTCCGTGACGTTCCACTTATTAGTTTTCTCTTACCACCTCTCTGTTTTCGAAAAAGTGACGTGCTCCCCACGCGCGACAATGGAGGTGCCAGAATTTTTCCCACCTCCTGAAAACTTAACGGCGGCTGTCGTGCACCCATTATGCGAAGAATGGAAGGGGGGATCCGAGGTTGCCATCTTCCACCTCGCCAGTATCTTCCTCGTTTTGGGGTTCATGGGAGGGAGCGGGTTCTATGGGCTCCTCTACTTGTTTACCTTTCTGACGCTCGGTTTCTTCTGCACAACCATTTGGTCATGGTCGGACGCGTGCACCACCGACACCTTTTTGTGGAATTTCGCTCTCTTTGGGGTATGTGCAGTTCAAGTGGTGCTTGTCGCCTACCGACTGAGGAACGTTACTTTCGAAAAGGAGTTTCAAGATCTGTACAGCTACCTGTTCAAAAAGCTGGGGGTGTCGCTCACCCACTTCGGCAAGATAGTCGCCTGTTGTGAAGGGGACATCCACACTATAGAGAAAGACCACTGTTTTGCTATGGAGGGCAAGACTGCAATTGATAAGCTGTCCGTTCTTCTGTCCGGCAGaattcGTGTGACAGTAAATGGAGAGTTTTTACATGACATATATCCTTTCCAGTTTCTCGATTCACCTGAATGGGACTCTCTCCGGCCATCAGAGGAGGGACTTTTCCAGGTGACCCTGCGTGCAGATAATTGCTGTAGGTACGTTTCTTGGAGACGTAAGAAACTGTACCTACTCTTCGCCAAACACCGCTACATCGCCAAGGTCTTTGCGCTCGTGGTGCGGAATGACATCGCGGACAAGCTGTACTCCCTCAACGACAAGGCGTTCGACAGCCGCGGGTTCCGATATGATCTCCGGTTACCCACCTACTCTCACGTGCCCCCGTTGCCTGAATTAGACCGGACAGATGCGTTCCTACGAGTCCCAGCGCAATATGACCATGGACACCGTGCCCGTGTCCCTATAACTATAACAGCACCGAAAGAGACTGTCTCGTGACTGGAACGGAACTCTTTAATGTTTGTTTTTCATTAATGGATGTTGTTTTTGTCTGTTTGTTATCCTCAAGTGCTTAGGCTATAGATAGGGCATAAGCTATGTAATTTACGCATCAACATAGAATACATTGTAGCACATCAAGTAACCCTCCACTTGGTTTTCCATACATAATGCAATaggcgcgcgcgcgtgtgtgtatgtgtgtgtgtgtgtgtgagtgtgagagagagattttctCTGCATCAAAATACCAGCGAAATGTTACCCCTGATTTCTGCTTATGTTTTATAGTGCACTTTACTATCTGTCTGTCTTAAATTGAGACTGTATATTCAATTTCCTTACTGAGTTTTTTTGGTCGATAGTTGTGTTTAATCGTAATAAATTATCAACAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261085 lncRNA upstream 60317 15825304 ~ 15825708 (+) True G228223
TU260833 lncRNA upstream 68885 15815287 ~ 15817140 (+) True G228034
TU260831 lncRNA upstream 84170 15801361 ~ 15801855 (+) True G228032
TU260810 lncRNA upstream 145344 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 173906 15711587 ~ 15712119 (+) True LOC110503805
TU261287 lncRNA downstream 277308 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 338191 16226906 ~ 16229345 (+) True G228451
TU261600 lncRNA downstream 802829 16691544 ~ 16693504 (+) True G228707
TU261607 lncRNA downstream 813937 16702652 ~ 16702864 (+) True G228711
TU261611 lncRNA downstream 818444 16707159 ~ 16734495 (+) True G228715
XM_021592670.2 mRNA upstream 7503 15867255 ~ 15878522 (+) False LOC110512078
XM_021592671.2 mRNA upstream 7503 15867289 ~ 15878522 (+) False LOC110512078
XM_021592673.2 mRNA upstream 7503 15867361 ~ 15878522 (+) False LOC110512078
XM_036970491.1 mRNA upstream 7503 15867362 ~ 15878522 (+) False LOC110512078
XM_036970477.1 mRNA upstream 7503 15868046 ~ 15878522 (+) False LOC110512078
XM_021592653.2 mRNA downstream 404 15889119 ~ 15898210 (+) False bves
XM_021592659.2 mRNA downstream 404 15889119 ~ 15898210 (+) True bves
XM_036970535.1 mRNA downstream 50734 15939449 ~ 15971189 (+) False hace1
XM_036970525.1 mRNA downstream 50734 15939449 ~ 15973343 (+) False hace1
XM_036970531.1 mRNA downstream 50734 15939449 ~ 15973343 (+) False hace1
TU260768 other upstream 189381 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 641743 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 790112 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 887950 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 624788 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 754636 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 905984 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2406639 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2681294 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile