RNA id: XR_005039833.1



Basic Information


Item Value
RNA id XR_005039833.1
length 524
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118944492
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15932818 ~ 15935521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCATAGACTTTCCCAGAGGGTCCGTGCTATACGGGATCTTTAGGATGTCCACACCTCTATCAAGTATAAATGTAAATTGGTTAAGTTTAGTGTTAGTTTAGGGTAAGGACGCCCCAAGGAATCCGGATTGCAGTGACCGTTCATAGAGTGAGAGACTGGCACGGTATTTGAGAGCTCGGCGGCAACACAACATTCATTCGTTTTTTACAAGTGACAGTAGCGAGTGTCTGCCCAAGATAGTTTCCTTATTCGAGACGATGAAAATAATGACCAAGATGTCCTTGATCCAATTGAGGAATGTTATGAGCCAGAGCAACCACTCAGCTTCACTGTAGGTGCTCAACCCACCCCCCTCATTGTTCTCCCTCCACAAgaaatttccactacaACATATACCCCTGTGCCATCTCAGTGTAACATGATCCATCCAAGGCCTCAGCTGAATGTCTAAAATGTGAGAAATgacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtcccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU261761 lncRNA downstream 74026 15858361 ~ 15858792 (-) True G228823
TU261759 lncRNA downstream 79617 15852446 ~ 15853201 (-) False G228822
TU261760 lncRNA downstream 79617 15852446 ~ 15853201 (-) True G228822
TU261069 lncRNA downstream 137067 15795513 ~ 15795751 (-) True G228207
TU261053 lncRNA downstream 141490 15787622 ~ 15791328 (-) True G228191
TU261858 lncRNA upstream 36114 15971558 ~ 15973267 (-) True G228889
TU261903 lncRNA upstream 105838 16041282 ~ 16044067 (-) True G228933
TU261908 lncRNA upstream 119954 16055398 ~ 16056008 (-) True G228938
TU261965 lncRNA upstream 216332 16151776 ~ 16152337 (-) True G228994
TU261976 lncRNA upstream 232558 16168002 ~ 16168219 (-) True G229005
XM_036970514.1 mRNA downstream 20089 15900898 ~ 15912729 (-) True LOC110503781
XM_021592693.2 mRNA downstream 71249 15853231 ~ 15861569 (-) True LOC110512120
XM_036964264.1 mRNA downstream 102792 15824078 ~ 15830026 (-) True LOC110503786
XM_036970409.1 mRNA downstream 115665 15801359 ~ 15817153 (-) True LOC110503794
XR_005041232.1 mRNA downstream 247764 15683972 ~ 15685054 (-) True LOC118946067
XR_005041267.1 mRNA upstream 29597 15965041 ~ 15965445 (-) True LOC118946082
XM_036970551.1 mRNA upstream 251937 16187381 ~ 16421976 (-) False LOC110512031
XM_036970556.1 mRNA upstream 260457 16195901 ~ 16421977 (-) True LOC110512031
XM_036970567.1 mRNA upstream 869558 16805002 ~ 16826108 (-) False cep162
XM_036970564.1 mRNA upstream 869558 16805002 ~ 16826110 (-) False cep162
TU261050 other downstream 141653 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 224553 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 331330 15601015 ~ 15601488 (-) True G228094
TU260846 other downstream 394503 15536365 ~ 15538315 (-) True LOC110512327
TU259832 other downstream 1296108 14598789 ~ 14636710 (-) False LOC110503689
TU262386 other upstream 903945 16839389 ~ 16839839 (-) True G229373
TU262393 other upstream 914528 16849972 ~ 16850199 (-) True G229380
TU262748 other upstream 1109581 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 2039801 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 2158312 18093756 ~ 18131054 (-) False LOC110503747

Expression Profile