RNA id: XM_036970525.1


Basic Information

Item Value
RNA id XM_036970525.1
length 4903
RNA type mRNA
GC content 0.49
exon number 24
gene id hace1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15939449 ~ 15973343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGTAATGAAAACAGGAAGAATGGGACTTGACACAAGAAATGTTGCTGAATGAatcagagggtagagagaggaaaaggggaagCCTAATGTAAATTTCTCGGCGGCTCGATGGATGACATCGAAGCCAGAAGCACCCTTTTAGCGGAAAAATAATCTTGCTCGAGGCTTTGTATCCTCGGTTTTGTTCCCGGTTGTTGGTACACATATGATGGAACGGGCGATGGAGCAACTAAACGTACAGCTGAACAGGCTGACCCGCTCTCTGCGTCGCGCCAGGACTGTCGAGCTCCCGGAAGACAATGAAACTGCAGTCTACACACTCATGCCAATGGTTATGGCTGACCAGCACAGGTCGGTTTCTGAATTACTCCTCAACTCCAAGTTTGATGTGAACTACGCTTTCGGACGAGTCAAGAGAAGTCTACTTCACATTGCTGCCAACTGTGGATCAGTGGAGTGCCTGGTCCTACTGCTAAAGAGAGGAGCGAACCCTAACTACCAGGACATCTCAGGCTGCACCCCTCTGCACCTGGCTGCCAGAAACGGACAGAAAAAGTGTATGGGAAGACTACTAGAATACAATGCAGACGTGAACATCTGCAACAATGAGGGACTGACAGCTaTCCACTGGTTGGCTGTGAACGGGCGGACTGAGCTGCTTCATGACCTGGTGCAGCATGTGACTAACGTGGATGTAGAGGATGCCATGGGACAGACCGCCCTTCATGTAGCCTGCCAGAACGGACACAAGACTACGGTGCAGTGCCTGCTGGACAGTGGAGCGGACATCAACAGACCTAACTGCTCTGGGGCCACACCCCTCTACTTCGCCTGCAGCCACGGTCAAAGGGACACGGCACAGATCCTTCTCTCTCGAGGGGCTAAGTACCTACCTGACAAGAATGGAGTCACCCCTCTGGATCTGTGTGTACAGGGTGGTTATGGAGAGACGTGTGAGATCCTCATCCAGCACCATGGCAGACTGTTTCAGACACTCATCCAGATGACACAGAATGATGACATCAAAGAGAATATGctcagGCAGGTTCTAGAGCATGTCTCCCAGCAGAGTGACAGTCACTACCAGAAGATCCTGACCAGTCTAGCAGAGGTGGCCACTACTAATGGACACAAACTCCTCAGtctctccagtagCTACGAGGCTCAGATGAAGAGTCTGCTGAGAATCATCCGGATCTTCTGCCATGTCTTCCGCCTGGGCCCTTCCTCTCCCAACAACGGGAATGACATGGGATACAATGGGAACAAGACGCAGCGCAGCCAGGTCTTTAAGcatctacccctctctttctttctcttcctctctctctttctctttctctccctatttccctctctctctctttcaacatctatctgtctgtctctctctctcgctctctccatccctctttctctcccctctctctctcctttctccccttcactcgctccctctccttcactcactcagtctctttccttgcctccccctttcctctctctctctgatttcctCCAGCCGTTGGAGTTGCTGTGGCACTCTCTAGATGAGTGGTTGGTGTTGATCTCTACAGAGCTGGAGAAGAGCCACCAGGACCcctccaactcctcctcctcagggAGTGAGATCgcctccctcctcctcaaacAACGTGGCGAGGTCGACTCCGCCTCCACCCCTGCCGTCTTCACGGTGGCACCATCGCTGCCACCCTCCATGCCCCTACCCCCTTTGCCGGACCCAGAGGGTGGCAAGAGGACCCCGGAGGTTCTTATGGAAACGCCGGAGGTATACGCGGACGGAGAGGATGTCATCTCTATGACGGCCAATCGGCTCAGCGCGGTGATCCAGGCCTTCTACATGTGCTGTTCCTGTCAGATGCCACAGGGAATGACATCTCCTCGCTTCATAGAGTTTGTCTGCAAGCATGACGAGGTGCTCAAATGTTTCGTAACCAGGAATCCAAAGATCATCTTTAACCATTTCCACTTCCTGTTGGAATGTCCGGAGCTCATGTCCCGCTTCATGCACATAATCAAAGGCCAGCCCTTCAAGGAGCGCTGTGAGTGGTTCTATGAGCACCTATTGGCAGGACAGCCAGACTCCGACATGGTCCATCGACCTGTCAACGAGAACGACATCCTGCTAATCCACAGAGAGTCCATATTTAGCAGTAGCTGTGCGATGGTCTCCAAATCGACCAATGAAAAGCTCAAACAGGGCATCGCCGTACGATTCCATGGAGAGGAAGGAATGGGCCAGGGCGTGGTGAGGGAGTGGTTTGACGTCCTGTCCAATGAGATCATCAATGCAGACTACGGCCTCTTCACCCAGTCAGCGGACGGCACCACATTCCAGCCCAACAGTAACTCGTCAGTGAACCCTGATCATCTGAACTACTTCCGGTTTGCGGGTCAGATCCTGGGGTTGGCTCTTTACCACCGTCAGCTGGTCAACATCTACTTCACCCGCTCCTTCTACAAACACATACTGGGCATCCCAGTGAACTACCAGGATGTGTCGTCCATCGATCCAGAGTATGCCAAGAATCTGCAGTGGATCCTGGACAACGACATCAGCGACCTGGGACTGGAGCTCACCTTCTCTGTGGAAACAGACGTGTTCGGCGCCATGGAGGAGGTGCCACTCAAACCTGGTGGGACTAGCATCATTGTCACCCAGGACAACAAGgcAGAGTATGTCCAGTTGGTAACAGAGTTGAGGATGACTCGAGCCATCCAACCCCAGATAAATGCTTTCCTGCACGGGTTCCACACCTTCATTCCCCCCTCCCTCATCCAGCTCTTTGATGAATATGAATTGgagctgtTGCTGTCTGGGATGCCAGAGATCGATGTGCAGGACTGGCACAGGAACACAGAATACACCAGTGGCTATGACCTGGAGGAACCTGTCATCCAGTGGTTCTGGAAGGTGGTAGAAAGCCTTACCCAAGAGGAGAGGGTCCTACTGTTGCAGTTTGTCACTGGCAGTTCCAGGGTACCTCATGGTGGCTTTGCCTTTCTGATGGGAGGTAGTGGCTTACAGAAGTTCACTATTGCCTCTGTACCATACACATCAAACCTACTGCCTACCTCCAGCACCTGCATCAACATGATGAAACTCCCAGAATACCCCAGCCAGGAGGTCCTGCGGGACAGGCTGCTGGTCGCACTGCATTGTGGGAGTTACGGGTACACCATGGCGTGACGCTGGCTGCAGCTGCGTCTCAGCGGGACTCCTCGGGTCCATGCacacgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcattgGCATGGACACATCAGTGCAAGGAATCCATCCAACACTTCCTAATCCAAACATATTTCACCTATCTATGTGGCATATTTCACCTATCTATGTGGCAGTTTGTTTTAGCTGGGTAGATTATTTTCTACAGCCAGAGCTAGCTATGATTTGTATAAGATAAACAAGCTCCCTGTCATTTCAACCCAATTGAAGGCAAAGGAAATGTGATACCCCTGATTTCACTCTGAACTGCCAAAAACATGTTACCATGGTCACAACAACAACTTATCCACTAGACTGGCTGCACAGCATCCCTCCCACGGCGTGAAGCCAGTCAGCTGCCTTCCTTTTAGTCTCTCTCCTTTGGCATTCTTCTCCTGTAACATGGTCATAAGGAATGATCTGGTTGGTGTGTATTTCAAATTGAAGGGGGAGTCTATAATGATATTACTGTAAGAGGCTGTGGCCAGGTGGTTTTACATGTGTTTACCAGGGAGGTAGTCGTAAAAAGGTGGCAAAGATTCTAGCCTGCAAGTAACATAAACACTAATGCAAAAATTGCTAATTTGTCCTAGGAATAGGTACATAAACGATTCCCAAAATGAATAGAAGCGTTAACGGTGCTTACAGGCGTTTACCCCCCACTACAGTACATCCCTGATCTTCACAGCTGCCTAACCACAACTCCCTCACCCTATAAGGTGCATGTCTCATGGCTCTACTTTGTGAGGTTCTTCAGTTTAGTGTCATTCTGTTGTGTTAGTCTGTCATCTgcagctgtgtctctgtgtccttgTAGTGATCATCAGGACCCAGTCTTTCAAAAGTTATCTATCCGGATTTCGCCTATTGGACAGGattaatagaatgaatagaacagacGAATCATTGActtctagtcattctatttctatcagGTTAGAAAACTTTTGGAAAACTGGGCCCAGTAGTCAGTCATCCCTTTCTATTGTATCTGACTGGCAGGACTCtctggctgcatcccaaatggatccgtagttcctatatagtgcactacttttgaccagagccctatgggccctgatcaaaagtagcgcagtatgaagggaatagggtaccatttgggatgcagcctctgcttaccatgttgtatttctctCAGCTCAGTCGACTTGAAGGTTAGAGgagcactacagtatatagagctAAGTGAAAGGTTTGGTCAGCAGTGCCAAAAAGGAGAGCCAGTTTGATTTTgattgcttttttgtttttatcCTACCTGAACATTATGGTGGAACATGTTCTAAAAAGGGACAGAATCATATCATGACTTGACATATCATGACTTGACATATCATGACTTGACATATCATGAATGTAGCTAAGAAATGTTTTATTCTTGATCCTTGATTTAAATGATTCTACTTCTTTACAATGATGTGGGAATGTAAATACTTATATTTCATATTATTTATCACTATTGTTTTACATGTATGACTTGTTTTGCAATTGTAATCAGATGTTGTATTGTATACAGAGCCTTTATAGATATTTCTGCAAATTACTCAAAAACAAAGTATGTATTTTACCATAAACATAATACATTGTTTAAACTTTGAGATTGTATCCCCCCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261085 lncRNA upstream 113741 15825304 ~ 15825708 (+) True G228223
TU260833 lncRNA upstream 122309 15815287 ~ 15817140 (+) True G228034
TU260831 lncRNA upstream 137594 15801361 ~ 15801855 (+) True G228032
TU260810 lncRNA upstream 198768 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 227330 15711587 ~ 15712119 (+) True LOC110503805
TU261287 lncRNA downstream 192680 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 253563 16226906 ~ 16229345 (+) True G228451
TU261600 lncRNA downstream 718201 16691544 ~ 16693504 (+) True G228707
TU261607 lncRNA downstream 729309 16702652 ~ 16702864 (+) True G228711
TU261611 lncRNA downstream 733816 16707159 ~ 16734495 (+) True G228715
XM_021592653.2 mRNA upstream 41239 15889119 ~ 15898210 (+) False bves
XM_021592659.2 mRNA upstream 41239 15889119 ~ 15898210 (+) True bves
XM_021592665.2 mRNA upstream 50734 15886025 ~ 15888715 (+) True LOC110512064
XM_036970475.1 mRNA upstream 60927 15868056 ~ 15878522 (+) False LOC110512078
XM_036970561.1 mRNA downstream 484376 16457719 ~ 16476369 (+) True LOC118946091
XM_036964386.1 mRNA downstream 504582 16477925 ~ 16515897 (+) False LOC118944532
XM_036970562.1 mRNA downstream 578092 16551435 ~ 16575223 (+) True LOC118946105
XM_036970560.1 mRNA downstream 618811 16592154 ~ 16598002 (+) True LOC118936471
LOC110503770 mRNA downstream 645849 16619192 ~ 16674738 (+) False LOC110503770
TU260768 other upstream 242805 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 695167 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 843536 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 941374 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 540160 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 670008 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 821356 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2322011 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2596666 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile