RNA id: XM_036970561.1


Basic Information

Item Value
RNA id XM_036970561.1
length 1311
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC118946091
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16457719 ~ 16476369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCCTGCAAGTATTTATACGCGTACTACAATACCCACTACTCCACCTTTGACAGAACATCTGACGTAAACGCTTCTGACAGTGTAGAAACGTGTGTATTAAGTCCTTTCTGTCGTTGCGAGTACAGATCAGAGAAAAGACTGTGTTTGGTAGCATCTTATGGACCACAGAGTGGTAGGCAACCAATGTCTCCGCCCCGGTTCACCAGCGGCCTGCGCTCCTTCTCTACTGTCAGCAAGCAGGAAGACTTCTCTGAAGAAGTATATGATCTGAAGACCAAGCGTCTGAAGAGGCAGGAGCTGTTCTCCAGAGAGGGCCTGACATGGCAGAAGATAGTCCAGTTCTTCACTCAGCACCTGGAGAAGGCAGAGCAGCAGGCtgcagcacaggagctgaagagCATCCTAAAGGCTGCCAAGCAGATAGGTGGCGGAGTTTGTTTGTTCCCAGAGCTCCTGTCGCTCCCCTCAGCGTGGCTCGGCCTTCGGACGCAACATCACCTTCTCCTATGACTGTTACACCCTGGACCCCCAGGAGGCCCTGCCCTGGGCGGGGGGCCCTGAGGACGAGACCCCTGGTGGAGGCCTGGACTTCCAAAGCTTCCTCAACAACCATCAAGGCCTCTGGGGTAATGGGGGAGAGGCGGATGGAGGCAGGCTAAGCCCGGGAGGGGCTCAGAGCTCTGGGGATGGGACCAAACCTGAGGGGGAGGTTGAGAAGTTCCTGAACGGAGGCAACATGATCTCCTCCAGCCCTGAGGAACTGTGCACCTCCCTGTTTGAGATGCTGGCCTCCACCAAGAGTGACGACGAGCTGCAGAACGAGctatTTGAGCTGCTGGGCCCAGAGGGATTTGGGATGATCTCTGTTCTCCCCCAGCGAAGGTCTTCCATCATGAATTCTCTCCTTTCGATCCCTGCAGACAGGATCAACTACCCACCAGGTGAGTCAGACCCCACCCCCTGCACCAGAGGCATCCAGGTCATCTCCATAGAAACTAGAGATCCACCACACTCTCTGAGAGCAGCGGGGTAGAGCATTGTTGAGAAATTAAACTGTAGATAATTGGTTTGAAATTCAAAGTCTACCTACCTAGACAAATCTACTGACTCCAACATTCATCATTGAAAAAAAATTAAACGATGAAATAAATAACTATTTTGCCTGTCACTACCCCTCATTTGGAGGACAGCTTTTAATATTAGGCCTTTTTAATTTAGATGTTCAATACTTATTTACCCACAACCTTCATCAAAGTCAGGGTTTTCAAGGGAAGGAGAAGGTGTGGTCTGAagtataggaggaggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261329 lncRNA upstream 228374 16226906 ~ 16229345 (+) True G228451
TU261287 lncRNA upstream 291354 16166023 ~ 16166365 (+) True G228414
TU261085 lncRNA upstream 632011 15825304 ~ 15825708 (+) True G228223
TU260833 lncRNA upstream 640579 15815287 ~ 15817140 (+) True G228034
TU260831 lncRNA upstream 655864 15801361 ~ 15801855 (+) True G228032
TU261600 lncRNA downstream 215175 16691544 ~ 16693504 (+) True G228707
TU261607 lncRNA downstream 226283 16702652 ~ 16702864 (+) True G228711
TU261611 lncRNA downstream 230790 16707159 ~ 16734495 (+) True G228715
TU261625 lncRNA downstream 234541 16710910 ~ 16711817 (+) True G228722
TU261662 lncRNA downstream 285752 16762121 ~ 16762351 (+) True G228752
XM_036970525.1 mRNA upstream 484376 15939449 ~ 15973343 (+) False hace1
XM_036970531.1 mRNA upstream 484376 15939449 ~ 15973343 (+) False hace1
XM_036970538.1 mRNA upstream 484376 15939449 ~ 15973343 (+) True hace1
XM_036970535.1 mRNA upstream 486530 15939449 ~ 15971189 (+) False hace1
XM_021592653.2 mRNA upstream 559509 15889119 ~ 15898210 (+) False bves
XM_036964386.1 mRNA downstream 1556 16477925 ~ 16515897 (+) False LOC118944532
XM_036970562.1 mRNA downstream 75066 16551435 ~ 16575223 (+) True LOC118946105
XM_036970560.1 mRNA downstream 115785 16592154 ~ 16598002 (+) True LOC118936471
LOC110503770 mRNA downstream 142823 16619192 ~ 16674738 (+) False LOC110503770
XM_021592640.2 mRNA downstream 202524 16678893 ~ 16700834 (+) False sim1a
TU260768 other upstream 761075 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 1213437 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 1361806 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 1459644 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 37134 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 166982 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 318330 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 1818985 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2093640 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile