RNA id: TU261452


Basic Information

Item Value
RNA id TU261452
length 475
RNA type TUCP
GC content 0.50
exon number 4
gene id LOC100653482
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16794699 ~ 16801793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagcgcaccgTTCTGCCTGCGCTCTTGGATCTATTTGGAGATGTCTGAGTTTAACCACTCAAATCTATCAGGCGGAAACGCTCCGGACCCGGACTACAAGTGGACGTATGAATATTACGACGATGATGAGCCTGTTTCGTTCGAGGGACTGAAAGCGCACCGATACTCCATCGTGATAGGCTTCTGGGTGGGCCTGGCTGTCTTTGTCATCTTCATGTTCTTTGTCCTGACGCTTCTCACCAAGACAGGAGCTCCACATCCTGAcaggacaatgacccaacacacctccaagctgtgtaagggctatttgaccaagaagagtgatggagtgctgcttcagatgacctggactccacaatcacccaacctcaacccaattgagatggtttgggatgagttggaccgcagagtgaaggaaagacagccaataagtgctcagcatatgtgggaactcattcaa

Function

GO:

id name namespace
GO:0006112 energy reserve metabolic process biological_process
GO:0048589 developmental growth biological_process
GO:0030818 obsolete negative regulation of cAMP biosynthetic process biological_process
GO:0040008 regulation of growth biological_process
GO:0097009 energy homeostasis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0005886 plasma membrane cellular_component
GO:0031782 type 4 melanocortin receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261618 lncRNA upstream 7470 16771674 ~ 16787229 (+) True LOC110511998
TU261662 lncRNA upstream 32348 16762121 ~ 16762351 (+) True G228752
TU261611 lncRNA upstream 60204 16707159 ~ 16734495 (+) True G228715
TU261625 lncRNA upstream 82882 16710910 ~ 16711817 (+) True G228722
TU261607 lncRNA upstream 91835 16702652 ~ 16702864 (+) True G228711
TU261723 lncRNA downstream 51044 16849976 ~ 16850190 (+) True G228793
TU262441 lncRNA downstream 91089 16890021 ~ 16890258 (+) True G229428
TU262444 lncRNA downstream 94376 16893308 ~ 16896967 (+) True G229430
TU262445 lncRNA downstream 96851 16895783 ~ 16897635 (+) False G229431
TU262446 lncRNA downstream 96851 16895783 ~ 16896345 (+) True G229431
XM_021592635.2 mRNA upstream 7472 16760501 ~ 16787227 (+) False LOC110511998
XM_036970563.1 mRNA upstream 7472 16760501 ~ 16787227 (+) False LOC110511998
XM_021592640.2 mRNA upstream 93865 16678893 ~ 16700834 (+) False sim1a
XM_021592643.2 mRNA upstream 93865 16678893 ~ 16700834 (+) True sim1a
LOC110503770 mRNA upstream 119961 16619192 ~ 16674738 (+) False LOC110503770
XM_036970577.1 mRNA downstream 423650 17222582 ~ 17341150 (+) False LOC110503758
XR_002470690.2 mRNA downstream 557842 17356774 ~ 17359570 (+) True LOC110505127
XM_021592620.2 mRNA downstream 664031 17462963 ~ 17476591 (+) True LOC110511964
XM_036970578.1 mRNA downstream 685276 17484208 ~ 17717455 (+) False LOC110503753
XM_036970579.1 mRNA downstream 732171 17531103 ~ 17717455 (+) True LOC110503753
TU261556 other upstream 147115 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 278806 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 1098055 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 1550417 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 1698786 15073144 ~ 15095913 (+) True LOC110511049
TU264064 other downstream 1496422 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 1771077 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 2052317 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 2427434 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 3028198 19827130 ~ 19844652 (+) True LOC110512505

Expression Profile