RNA id: TU263791



Basic Information


Item Value
RNA id TU263791
length 1134
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC110505118
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17975160 ~ 17985544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGATGGATTGGCCTATTTGTCAAAGCATCAGCTGCAACACATCACTAACTTCTCTGCCCACGTGACAGTGCTATGCAGGCTTGTTGCAGCACACTGTGAATGACATGCTGGTGTGACTGTGAGCTCAGCCAGCTCAGGCCATAAGGCTCAGCAACCAGCAGGCTGTGTGTATTGTGTGGCAGTGTTGGGTACAGCACAGGCCAGGCCTGTTGGATTAGCATGAGAATGGGGAGTCAGTGAGTGGAGAGAGGGCTGGTATAAAAGAGTGGGAAGCAGAGTTTAGTCTCTGTCACAATAGCGCCTCTCCTTGACCTGTCCTTGTGTCTCTGCTCTGCCTCCAAGCACTCTTGCTGACTGTggtttctctctattctctcctccacctccttgtCTTCCCTCGactcctcctccacctcaccctgcccttccccctcctgctcctcctctctgtcagcaTGGATGACAACATAGAAATCCACACCTTCCTGTACTTTGCCTATGGCAGTAACCTACTGAAGGAAAGGCTCCATCTCAAGAACCCCTCCGCTTCCATCCACTGTGTGGCCAGGCTCAAGgaCTACAAGCTGATATTTGGGAACTACAAGGGTCTGGCCAGTGACCGCTGGCATGGGGGTGTGGCGACCATCGAGAACAGCCCAGGGGACGAGATGTGGGGAGTGGTATGGAGGATGAATGTGGCCGACCTCGAGTCTCTAGACAGGTGATTTTAATGGGGGCGGAGCAGAATGGCTTGCCGAAGAACTACCAGGAGAAGCTGAAGGCCATCTAGACCAACAAGTATGAGGGCCCACTGCCTGTCATGGCTGAGCTGGAGCGGATTAtgaaaagagacaaagagagagccaACCACCGATCTGACGCTTAACAACACCTTGAACAAACTGCCATGTTAGGGAACTCAACTCCTGGTAGGACAATATAAGTTTGCTTCAACATCTTCCATTGTCCTACCAAGAGTTGCTGAATATCTTCTCATCTCCAGTTTGCTCCACTGTTCATGCACCTTGGTTTGAAAGCAAGTTAGCGACAGCATGTATTTTTCTCTAGGAACTCAAACCTGCCTAGAGAGAGAACTGTGTTCACGAACCCACTGGTTAGAGAAACCCTCAACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU263814 lncRNA downstream 2015 17972855 ~ 17973230 (-) True G230710
TU263811 lncRNA downstream 4580 17970427 ~ 17970665 (-) True G230707
TU263804 lncRNA downstream 23201 17951682 ~ 17952044 (-) True G230700
TU263801 lncRNA downstream 25589 17949429 ~ 17949656 (-) True G230697
TU263799 lncRNA downstream 36828 17934850 ~ 17938417 (-) True G230695
TU263824 lncRNA upstream 10731 17988640 ~ 17988873 (-) True G230720
TU263826 lncRNA upstream 12352 17990261 ~ 17990461 (-) True G230722
TU263831 lncRNA upstream 21721 17999630 ~ 18000387 (-) True G230727
TU263830 lncRNA upstream 24757 18002666 ~ 18003098 (-) True G230726
TU263836 lncRNA upstream 29158 18007067 ~ 18007309 (-) True G230730
XM_021592592.2 mRNA downstream 5394 17968009 ~ 17969851 (-) True LOC110511884
XM_021592602.2 mRNA downstream 10367 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA downstream 10367 17957248 ~ 17964878 (-) True LOC110511898
XM_021592596.2 mRNA downstream 10409 17957248 ~ 17964836 (-) False LOC110511898
XM_021592611.2 mRNA downstream 27809 17940518 ~ 17947436 (-) True LOC110511923
XM_036970588.1 mRNA upstream 55434 18033343 ~ 18048841 (-) True LOC110511860
XM_021592571.2 mRNA upstream 71837 18049746 ~ 18085029 (-) True LOC110511851
LOC110503747 mRNA upstream 115795 18093704 ~ 18154474 (-) False LOC110503747
XM_021592560.2 mRNA upstream 202581 18180490 ~ 18182783 (-) True LOC110511808
XM_021592549.2 mRNA upstream 222149 18200058 ~ 18206177 (-) False LOC110511774
TU262748 other downstream 926901 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1125046 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 1135406 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 2184080 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 2266980 15706234 ~ 15708265 (-) True G228098
TU263980 other upstream 115847 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 115847 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 621821 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1181391 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 1564193 19542102 ~ 19599101 (-) False rims2a

Expression Profile


TU263791 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
End of interactive chart.

TU263791 Expression in each Bioproject

Bar chart with 7 bars.
TU263791 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.