RNA id: TCONS_00030152



Basic Information


Item Value
RNA id TCONS_00030152
length 1284
lncRNA type read_through
GC content 0.36
exon number 3
gene id XLOC_014537
representative False

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 7559920 ~ 7576117 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAGGAACAACTTTGCCTGAGTATAAAGCCTGGTGAGGAACATCTCGAGCTGTAACATCAACACTATAACACGAGAATGTCGTTTCACAGCAGAAATCACACTGGGAATCACGCCAGATGACATGTGCTTGCAGAGAAACACCGCCCATgctctcctctgattggctgtGACTTTGAACAGACAAATTGCTTCTTGGAAACTGGTactaaatatttctctttttttttcttgatgataatattttcattctttagtcaataaatagaaaaaattaaatgcatcatGGTTTTTACAAACCTTTTAAGTTAAAACATAACACCCAATTGACACGGGGCTTCAgagtcaacgcttcccatttatTTTGAATGGATGACCGTCGGCCTAGCTCAGccagcgtcagccaatcagattgctttatgcaaataccccagctcagactaTATGCTATGATGATTGCGTCAGCCCTAACTTctgacacgccctctgtcaagcattgacgctgaatcCCCACCTGAATTGGGGGTGAATCGTAAGTGTTTTTAACATTAATGAAAGATTATGTAGAAATAAAGACTGTTAAAAAGTCAACTTGAccataacataaataaattacatttttaaatatattttaaaaagcataaagcAGTTGTTTATATCTATAATAATATTCTGTAATAACTactgtatttttcttttattgaatTCTTCTTTCAagacaatgaaaaaaaagtttttaccaaTTTTTTGAATGATTAATGTGCAAATCcacatcattatcatcatcaacgGTTCTATACAAAACCCTTATCAATATCTTTTCATGTTAACCCTGCCATAATATACAAGGTGTTCGATGCAGACTTTACACAAAATCAGCCCACAATCTGTTCAATCTGAATCATAATATGTGTCGATAATGcaataattatcattttaatcttgataacgAGAACAGCAACCAGTGGCAGATCTGTAATTAAACAGGGTGAATGAAAACAACATCTATATACAATGCTATTTTTGCTTCTGCTTTTATGGTGTTTTTCTTTCTGTAACAAGACAACCGGTACAAAACACAGACATTGTTTGTTTACGCTGTTGTTTCTAGTAGTTGGTCCACCTTCTCAATGTCAATAAAGGTGGTTGTTTAGAGGCGGTGATGATCATGACAGACAAAAATGTGTAGTAGTGTAATCTGAAGCATGCATTAGTGTCAGCAGAATCTCAGCCTTAAGCCATTTCAGGGTCAGGCGAGCACTAAAAGAGGATGAGTGTCATTTCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00030151 lncRNA downstream 48420 7513118 ~ 7513678 (-) True XLOC_014534
TCONS_00028764 lncRNA downstream 60359 7501070 ~ 7501739 (-) True XLOC_014533
TCONS_00028754 lncRNA downstream 270395 7287530 ~ 7291703 (-) True XLOC_014526
TCONS_00028753 lncRNA downstream 278548 7276060 ~ 7283550 (-) False XLOC_014526
TCONS_00028747 lncRNA downstream 301179 7258339 ~ 7260919 (-) False XLOC_014525
TCONS_00030154 lncRNA upstream 225313 7801430 ~ 7812565 (-) True XLOC_014541
TCONS_00030155 lncRNA upstream 307430 7883547 ~ 7922563 (-) True XLOC_014544
TCONS_00030156 lncRNA upstream 411544 7987661 ~ 8005050 (-) True XLOC_014545
TCONS_00030157 lncRNA upstream 545812 8121929 ~ 8123442 (-) True XLOC_014547
TCONS_00030158 lncRNA upstream 1071416 8647533 ~ 8648772 (-) False XLOC_014550
TCONS_00028766 mRNA downstream 21277 7529612 ~ 7540821 (-) True XLOC_014536
TCONS_00028765 mRNA downstream 36510 7518304 ~ 7525588 (-) True XLOC_014535
TCONS_00028763 mRNA downstream 67092 7482784 ~ 7495006 (-) True XLOC_014532
TCONS_00028761 mRNA downstream 111302 7445644 ~ 7450796 (-) True XLOC_014530
TCONS_00028760 mRNA downstream 120412 7439795 ~ 7441686 (-) True XLOC_014529
TCONS_00028770 mRNA upstream 105992 7682109 ~ 7690975 (-) True XLOC_014539
TCONS_00028771 mRNA upstream 118370 7694487 ~ 7706926 (-) True XLOC_014540
TCONS_00028772 mRNA upstream 243363 7819480 ~ 7832439 (-) False XLOC_014542
TCONS_00028773 mRNA upstream 243815 7819932 ~ 7832439 (-) True XLOC_014542
TCONS_00028775 mRNA upstream 510374 8086491 ~ 8096984 (-) True XLOC_014546
TCONS_00028762 other downstream 93782 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 284505 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 1323109 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 1718893 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028706 other downstream 1788063 5773921 ~ 5774035 (-) True XLOC_014501
TCONS_00028774 other upstream 249278 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028791 other upstream 1276423 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 2436381 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028819 other upstream 2547116 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 2662336 10238453 ~ 10242111 (-) True XLOC_014584

Expression Profile


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