RNA id: XM_021592488.2


Basic Information

Item Value
RNA id XM_021592488.2
length 2292
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110511665
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18343327 ~ 18348845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATTTGATGGTTGGGTATAGGTTATCAGTTCACACTCTTGCCTGTGCCTGTGGTACATACAGTATCATATACTGAGGCAACTGTGTTACATTATTAGTATACATGAGTTGTGTTTGGGAGGAATATTAGTAGACATGAGACCAATGCAGGAGAACATCAAGGTGCTTTACTTTGCAAACAAATGTCTGGAGCCATATGTAGTGATTATCACAGGGAACGATTCAGTAATGCCTCGATGGAGCGTGTGCAGCTCAGAGGAGGGTAACCGCTCTGAGGGCGAGGAGCCTGAGGACATACTTCCTGTTCTCCGAAACCACAGCCAGCTCCTCAACGACCAACACATCGAGAGTCTAGCCAATCACATACCAGCAAGGACACAGGGGTATCCATGGAACCTGGTCTACAGCACAGCCATTCATGGCACCAGCCTGAAGACTCTGTACAGGCAAATGGCCCACATCGACAGTCCTGTGCTTCTGGTCATCAAAGACATGGAAAAAAAGgtgtttggtgccttctcctcccatcccttcAGAGTGAGTGACTGTTGCTACGGAACAGGAGAGACTTTTGTCTACAGCTTCGACCCTGCATTTAAGGCCTACAGGTGGAGTGGTGAGAACTCTTACTTCATCAGGGGCCATATGGACTCTCTACAGATTGGTGGAGGAGGGGGGCTTTTTGGCCTGTGGCTGGATGCTGATCTGTACTACGGTGCCAGCTTCCCATGTCACACCTTCAACAACCAGCCCCTGTCCACCCAGCAAGACTTCACAGTGCAGGACCTGGAGGTCTGGACTGTCCAGTAAACAGAGCGAGACGCTGAGAGACTCAGAAgcggaaaagagaaagagaaaaaagccAGAGCCATGTCTATCTATGGTTTACAACATGGCTTTACTTGTGTTCAGTGAGGTTTAGCCTGTGTTCAAGCTGTTAAAGTACAGTAAGCTTAATATAGTAAGCTTGGTTTGtccaatgactgtatatatgaatggacaaCGCCATCGATCACGTGACACCAGTCATTCCTATGTGAAAACTCAATAGTGCATTTGAAGCCAAGGAAGTCCATTAAGATGGCGTCTCATGTGGGAGATTTACGTAGGCATTACATGCtagtttgagctactccaggatGTGACGTTGCAGGCTAGTTCAGTGCTGCCCCATCTCATTGAGTATTTCATGTTAAAGGCAGAATGGGGCATGCTGCCATTAGCTACTAAATTATGATAGTAACTTCTTCTGTGTGCGATTTTAAAATAATCGGTTTAAGCACATACATCTGGGGTAATAagacatttttgtttttatttgttattatatTTATACGAAGATTGACCATGAAGATTACCATCTTCCCATTCACTGTACTGGGGATTCTGTGTTTGGCAAATAATGCCTGCAGTACTGTGGTTGGCCTTGAATGAGAGGGGGCAGTCATTCACCCCTGGGTTTGTCACGTGTAAAACCTGGTCTAATGACTTTTAGGCTGGTTTTACCTGTGTTTTACCAGCGCGTAACCTATTATACCAGCATTAACTCAGGTTGTATCTGTGTTTTGCCTGGTTAACTGAGGATTGTATGGTGAGAGATAGACAGGCTGTTTATACAGTGTCCTACTGTTTGCTGCTCAATACCTGCTACTGAACAAGCTCTGTCCAATACGAGCATTACAACTGGTTCTAGACATCTAAGCTGTAAACCCTCCATCAATCCTTTGTTATGGACAGCATTTACAAACCAAAGCCCATTTTAGAGTAATATCCTATTTTCATTACAATTTCCTCATAAGCTTTAAACTTTATAGAGGCTAAGATGAACACACTACTGTACTACCCaactattttgtatttatttctgtgtctgtgttacaAGGGTACAACATCAGATGCCCCGTAGGGattcctcacacacacaacactcagGTCTAGAAACAGCCACGGCAGAGTACTGTCTCTTAGAGCTGCTAAAAGTGGCCTCTAATGGTTTGTACTAAAGGTATGGGTTTAAATCCATGTTAAATGTTTTCTTACATTTCTAAAAGAGAATAATGACATTTGTTTAAAAGAAAGAAACAGGATATAAGATGGACCAATTGTTTTAGTTTGGCGTCTTTTTCACATTCCTTTGTTTTTTATATTTGCTATAAAAAAAAGATACAGATATATTTAAAGAAATGTTATCCAGTgaagtattttgttttgtttttctgtaTGTGTGCTGTACAGTGCTGGCACTGTTAATGGCTCCTTATTAAAATTCTGCATTTCCAggtgacaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264154 lncRNA upstream 39009 18305474 ~ 18305714 (+) True G230997
TU264055 lncRNA upstream 39663 18298318 ~ 18305060 (+) False G230912
TU264057 lncRNA upstream 44132 18298318 ~ 18300591 (+) True G230912
TU264152 lncRNA upstream 46477 18297322 ~ 18298246 (+) True G230995
TU264151 lncRNA upstream 47445 18296975 ~ 18297278 (+) True G230994
TU264458 lncRNA downstream 180218 18529063 ~ 18529365 (+) True G231277
TU264460 lncRNA downstream 188785 18537630 ~ 18537829 (+) True G231279
TU264469 lncRNA downstream 199683 18548528 ~ 18548758 (+) True G231288
TU264429 lncRNA downstream 247098 18595943 ~ 18601890 (+) True LOC110511568
TU264547 lncRNA downstream 332861 18681706 ~ 18682023 (+) True G231363
XM_021592539.2 mRNA upstream 114086 18219599 ~ 18230637 (+) True LOC110511763
XM_021592555.2 mRNA upstream 147044 18188613 ~ 18197679 (+) True LOC110511795
XM_036964123.1 mRNA upstream 165869 18175433 ~ 18178854 (+) False LOC118944496
XM_021592565.2 mRNA upstream 180733 18160653 ~ 18163990 (+) True LOC110511835
trnar-acg-3 mRNA upstream 295673 18048978 ~ 18049050 (+) True trnar-acg-3
XM_021592478.2 mRNA downstream 780 18349625 ~ 18353319 (+) False LOC110511644
XM_021592475.2 mRNA downstream 791 18349636 ~ 18353319 (+) True LOC110511644
XM_021592456.2 mRNA downstream 10233 18359078 ~ 18386819 (+) True LOC110511603
XM_021592448.2 mRNA downstream 220853 18569698 ~ 18588248 (+) False LOC110511593
XM_021592445.2 mRNA downstream 239854 18588699 ~ 18601905 (+) False LOC110511568
TU264064 other upstream 48618 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1545791 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 1697139 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 1828830 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 2648079 15688343 ~ 15696644 (+) True zgc:162160
TU264434 other downstream 221164 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 502404 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 877521 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1478285 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 2209931 20558776 ~ 20565712 (+) True G233521

Expression Profile