RNA id: XM_021592478.2


Basic Information

Item Value
RNA id XM_021592478.2
length 1885
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110511644
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18349625 ~ 18353319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGTTTGCTTTACCTTTCGACTCACCAACGATAAGCGCTTGATCCACTTGTGTTCCTTCGACAATATGATTTCCACtaattaccacagccacaaagtggAAATTGgctaggcataaggttagcagggtggttaaggttagagataaggttaggtttaaaatcgcattttaaatacattgttgaaatgggcggggtttatgactttgtggctgtggtaactagtgtcGATCAATAAATATGGCAACCAACGAGGGTTCTGAACctgcaaatgtatatatttctAAAATAAACCAAGGTCAAGGCGAAGGATACGACAAGAAATGCATATTCTGCAAGGTTGTCAACAATGAGATGGGCACGGAGATTCTTCATGTTGACGAGGAGGTCTCTTGCTTCAGGGACATCAAGCCTGGAGCTCCCCATCATTACCTGGTTGTGCCAACGAGACATGTTGGAAACTGTAAATCACTCAGTAAAGAGCATGTGTCATTAGAGAAGATGGTGGAGATAGGGATGGAGATCCTTCAGAAGAACAATGTCTTAGACCTCAGTGACGTTAGGTTTGGCTTCCACTGGCCCCCATTCTGTTCTGTCTCTCACCTGCACCTACATGTGTTGTCACCTGCCAGTCAGATGGGCTTCATGTCCCGCCTCTTCTACAGACCCAACTCTTATTGGTTTGTCACTGCTGACCAGTTGATTCAGCAGCTGAACTCTAAGGGAGAGACCAACTGAGGAGTGGGTTGCAGTCTGGGCTGGTCCAGTGAGAAACGGGGTTACCTTACTAGTAGTGAAGTGAGCAGGTCAGGTCTGGTCTCCCTCCGTGGTTCTCTGTGTGAGTGTACTGTACTCCCCAGCAGGTTACAGTGAGACTAGTGATGATGATTCAAATCAACTCAACTAAGGTTTTTAATTCTAGTATCAAGCTGAACAGCCAAATCAGAAATTAAGCCAAATGTGTTTTCCTTACttgttattttaatttaatttaatttttttgaAAATGACCAATAGTTACTCTTTATTTTTTACCACAGAATATTAAATAGTAATGACTGGAATGATTTTGGGGTCAATTTCTGTTGGTATAGAAAGATATCAAAAGTGATACATGTTTGTGTTTAGGCTCTAGTATTAATGTAAAGAATGATTAGTAACGTAAAGGCATTCCTAAGTGATCATAACCAGGAGACCTGAGAATGGGATGTATTGGGACTGGGAAACCTACAGTAAGTCTCATTGCAGGATACCTTTGATAAAGATGTCTAATGCATGTGCATTGTGCCACTGgctggcatcccaaatggcaccttttcCTATAGGGCTCAAAAGTAGTGTAatgaatagtgtgccatttgcgATGCAGTCACTGTCAACAGTATCCCGTATTATGAGGTATAATAACTGAAAGCGGAGAAATATGATGAGAAGTATGAGCTCTTTTAGGCCTCAGTCAAGTGGTCAGAAAAGCAACTGTTTTGCATGAATGGTATTCAATCATACACGATCAAAGAGTAAAATGGAAGTGTACACTGGAGTGTGGAGGTTTAATATATTCACTGAATAATACCTACATTACTTATTCATCAAGATGCATAATAGGAGCTCAGTCATCCATAAACAATTGTTTCTTtagtcacattctgttaacacAATACTCTGCATTAATTGTGTTATTTTATTATGAATGTTGGCGAGTGATTCTTAATTTTGTTATGCACTACAGCCCAATGGAAGACTCAACAAAGTAATGTATGTTTAGTGTATGCTGCTGCATGAAATTAAGAGCGTCATGTGTTTGTATTTATTGGTTGACGTGTCGCTGTAAAATAATAATGGTGGTTCATGGTTAAATAAATGATGCATTGCTGCCTCCAAGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264154 lncRNA upstream 43911 18305474 ~ 18305714 (+) True G230997
TU264055 lncRNA upstream 44565 18298318 ~ 18305060 (+) False G230912
TU264057 lncRNA upstream 49034 18298318 ~ 18300591 (+) True G230912
TU264152 lncRNA upstream 51379 18297322 ~ 18298246 (+) True G230995
TU264151 lncRNA upstream 52347 18296975 ~ 18297278 (+) True G230994
TU264458 lncRNA downstream 175744 18529063 ~ 18529365 (+) True G231277
TU264460 lncRNA downstream 184311 18537630 ~ 18537829 (+) True G231279
TU264469 lncRNA downstream 195209 18548528 ~ 18548758 (+) True G231288
TU264429 lncRNA downstream 242624 18595943 ~ 18601890 (+) True LOC110511568
TU264547 lncRNA downstream 328387 18681706 ~ 18682023 (+) True G231363
XM_021592485.2 mRNA upstream 780 18343327 ~ 18348845 (+) False LOC110511665
XM_021592488.2 mRNA upstream 780 18344723 ~ 18348845 (+) True LOC110511665
XM_021592539.2 mRNA upstream 118988 18219599 ~ 18230637 (+) True LOC110511763
XM_021592555.2 mRNA upstream 151946 18188613 ~ 18197679 (+) True LOC110511795
XM_036964123.1 mRNA upstream 170771 18175433 ~ 18178854 (+) False LOC118944496
XM_021592456.2 mRNA downstream 5759 18359078 ~ 18386819 (+) True LOC110511603
XM_021592448.2 mRNA downstream 216379 18569698 ~ 18588248 (+) False LOC110511593
XM_021592445.2 mRNA downstream 235380 18588699 ~ 18601905 (+) False LOC110511568
XM_021592444.2 mRNA downstream 242940 18596259 ~ 18601905 (+) False LOC110511568
XM_021592320.2 mRNA downstream 334446 18687765 ~ 18692685 (+) True LOC110511366
TU264064 other upstream 53520 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1550693 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 1702041 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 1833732 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 2652981 15688343 ~ 15696644 (+) True zgc:162160
TU264434 other downstream 216690 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 497930 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 873047 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1473811 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 2205457 20558776 ~ 20565712 (+) True G233521

Expression Profile