RNA id: XM_021592448.2


Basic Information

Item Value
RNA id XM_021592448.2
length 3117
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110511593
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18569698 ~ 18588248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGCGTGTAGCGGGAGACCGCAGAGGGCTGAAGTCATAAGAGAGCGAGTTGGAGTGGGGAAATGAGTATTGCACGCAAAACTGAAAAGAGCTGAAACTGCGCAGATTATTTTTGCTTTAACTGTCGAACAACGAGAAGTGCGCGACAATCAAGTTGGTTCTCACCTCGTCGAATCTTGGTACTTTATTACAGTTAGGTGCTGCTGCAGCCAGTGACGCGCGCGGCTCCCAGTTTTTGTCTACTCTGTTAGATGATGGGGATGACGCGATGACCTCCTACACGCAGGGCACAATAAAGTAGCCCTCACACCTGGACGTGCGGGGAAATTCGAGAGAGTATCAGTGGAGGATACAGGAAGACAACTGAAACTGTATCAATATGCCAGCCTCGATTATATGATCTACGCTTTCTTTCTTTGAGTATCTTATTTTTCCCGCGGTGGATGATAATCTAACGGTTTGGTTGTGGGAATATGCTCACTACGGATACCTGATTTGGTCTCGCTTTGTGGCACACATGAGGATTCTATCAAGGATGTTACTGTCTAAACGGCCCAGGTGTCATTGGGCCATCGTAAATCAGACATCACTCTCTGCGCAGAGCAGGGGATTCTGCTCTTTCCAGGAATAAGACAACACATTCCCTCTCAAAAAAGTGGAATCAAAGCTGCACTTTTCTGGAGGACATTGACATTGGCTATTCAAGTCATCATCTCCGGGTTACTATGCAATTACAACtgatctcctttgttttgatctTGCACTGCATGGAATACACTGATTGTCAGCAGCAACCCTCTAGGTATCGGCAACATAAACAGAACCCAGGGGTAAGCTCAGGGTGCCAGGGAGGCTGTCTGACCTGCTCTGATTATAATGGCTGTCTGTCCTGTAAGCCCCGCCTCTTTATCTTCCTGGAGAGAAATGGGATGAGGCAGATGGGGGTGTGTCTGCCCTCCTGCCCCAGTGGTTTCTACGGCACCCGCTCACCAGACAGAAACACATGCACAAAGTGCAGGCCGGAGTGTGATTCTTGCTTCAATAAGAACCTTTGCATGCGGTGCCGAGCGGGGTACTATCTCCACCTGGGCAAGTGCCAGGAGAGCTGCCCAGAGAGCCTGGTCTGCAGCGACACACAAAGGGAATGTGTTCCCAAGTGTCCTGCGGACTGTGATGCCTGTCTGATCAATGACACATGTACGAGGTGCAGACCAGGCCTGTACCTGCTGCTGGGGAAGTGTCACCACGTCTGTCCAGATGAGTTTGAACCAAACGACAAACTCATGGAGTGTTCCCTTCAAGTGCACTGCGCAGTGGGTGAGTGGGGAGAGTGGAGCCCCTGCTCCCGGTCAGGGAAAACCTGTGGATTTAAATGGGGTGAGGAGACGAGGACCCGGGAAGTTGTCCAGTTCCCTACCGCCTACGGAAAACCCTGTCCCCCCATCTGGGAAAAGAAAGAGTGTGTCCTCAAGAGGAGGCGATGTCCAGGGCAAGGCAAGGGGAGGAAGGGTGAGCGGCGGGGCGAAAGGAGAAATCGGGACAACCGCCGGGACAAGGACAGCCAGGGGGAAGGCCGGCGGGAGAggaagaaggacagagagagggagaggggggaggcaggtgaCCGGGAGGACTctgagaacaggaacaagacagaGCAAAGACGCCGGAGAGGCCAAAACAGAGACCCTGTTGTCTCACCTGAGGGAGGAGGTCCTACACAGTAACAGAGCCTGGAGGAGCCCTCTCACTCCACCCCCTCTTTGTCCCCCTCGCCCCCTCAACTCCTTGCTGAAGGGGTGCTGCTGCTACCTGTATTatttaaatatatactgtatatgcacaAGAGAGATGGGGTCACTCGATCGGGCCACTACAGACTCTAAGGACTTCTCCCCTACATACCTACCTATCTGCCCCCCTCCACCACACACCACTGAGAGGCCGCCTCCCCCTTCCCGTCCTGTCCTCtagtttcaccagaccagagagacCCAAGAATGCTGTTGATTGGACGGGAATGAACAAAACTGCTCTTGTGAttggatggacagagaggagaggagtgagacaTTGAAATGTGACAGTATGGGGATGATGTGTTTGTCATTGGGAGTCGGGACAATGTAAATGCTTGTTGAATCGGTTATTTAAAAGGCTCCCGCCCAGTTAAAAACAAACTTTGCGTCTTGGTTTCGATGTAGGTTTAATTTGTGACATTATGTagaattgttgttgttgttgtctttatgtttttgtttgttgttttttgctGAGTAAATTATCATGGGATATCActaacagaaagacagacagacagtcagatgtGGTTACTGCATCCAGATGTATAGTAAACATATGAGACAAACCGACTGAATTGATTTTGTGAAAGAATGAGGACGGACCCCAGTGTTTTCCACCCAACTTATTATTGGTCATGTTTGTTCAGAAGCGTCCTGGACAAAGTGCTAGTTTGCCTGTCTGTGTAAGCAGGATCTGTGCTTTCACTAAAGCCACCTGAGCAGAAATCAAAAGCATCTGTATGTCAAATAAACTATAATGGGTTTGTACTTGTCTTTGTTTTTCATTTGTTATCTTTGGGTAATTCTATGCCTgaaaatatttttggtatctcagattgttctggcaacTGTCACATGAAACCTTAATTCATGGGAAGGATGTTTGGCATGCTTTTTCAatttgtatcacaaaccatttGGGGAAAAATCATGATAAAAGTGGACAAtttctgaaatatatatatatatatatttcagaaaCAAGACACTCCATATTTTAGAGCTCTcgataaggagtataatgacaccaCGATGTTGTCTTTATCATGTACAGTTCATGGATCATTTTACAGGGGACATCTATAGGTCTGAAAGGGACGAATTGGCCACTCTCATCCCACAAAAATAGTTTGTGGTACAAATCTAAAAAACATATCAAACATCCTTACTCCCATATGAAGTTTCTATGGGAAAATAGCTAGAACATTCTGAGATAACCTAAATATTTTTGGGACACGCTAGTATGGAATCGGCCCTTTATTATTTGTCAACTACATCAATAAACACTCTCTGGAGACCTGCCTTTCTAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264469 lncRNA upstream 20940 18548528 ~ 18548758 (+) True G231288
TU264460 lncRNA upstream 31869 18537630 ~ 18537829 (+) True G231279
TU264458 lncRNA upstream 40333 18529063 ~ 18529365 (+) True G231277
TU264154 lncRNA upstream 263984 18305474 ~ 18305714 (+) True G230997
TU264055 lncRNA upstream 264638 18298318 ~ 18305060 (+) False G230912
TU264429 lncRNA downstream 7695 18595943 ~ 18601890 (+) True LOC110511568
TU264547 lncRNA downstream 93458 18681706 ~ 18682023 (+) True G231363
TU264550 lncRNA downstream 107655 18695903 ~ 18696158 (+) True G231366
TU264553 lncRNA downstream 109090 18697338 ~ 18698907 (+) True G231367
TU264566 lncRNA downstream 186458 18774706 ~ 18775431 (+) False LOC110511301
XM_021592456.2 mRNA upstream 182879 18359078 ~ 18386819 (+) True LOC110511603
XM_021592478.2 mRNA upstream 216379 18349625 ~ 18353319 (+) False LOC110511644
XM_021592475.2 mRNA upstream 216379 18349636 ~ 18353319 (+) True LOC110511644
XM_021592485.2 mRNA upstream 220853 18343327 ~ 18348845 (+) False LOC110511665
XM_021592488.2 mRNA upstream 220853 18344723 ~ 18348845 (+) True LOC110511665
XM_021592445.2 mRNA downstream 451 18588699 ~ 18601905 (+) False LOC110511568
XM_021592444.2 mRNA downstream 8011 18596259 ~ 18601905 (+) False LOC110511568
XM_021592320.2 mRNA downstream 99517 18687765 ~ 18692685 (+) True LOC110511366
XM_021592297.2 mRNA downstream 123388 18711636 ~ 18720405 (+) True LOC110511341
XM_036970942.1 mRNA downstream 132663 18720911 ~ 18793719 (+) False LOC110511301
TU264064 other upstream 273593 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1770766 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 1922114 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 2053805 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 2873054 15688343 ~ 15696644 (+) True zgc:162160
TU264626 other downstream 263001 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 638118 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1238882 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1970528 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 2020045 20608293 ~ 20608725 (+) True G233545

Expression Profile