RNA id: XM_036970948.1


Basic Information

Item Value
RNA id XM_036970948.1
length 5566
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110511301
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18720911 ~ 18793719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTGACAGGCGTTCAGACCATGCAAACAATCCGTCATATGACTGGTACCCATACGAAAACACTGCAAGGAGGGGGAAATAATAATCACTGTCGGTGGTGGTGCTGCTGTTGCGAGGGAGAGGGAACCGCATCTCCCGATGTCTTCAGGCTGCCCGGATCGTTTGTTTATCTGCGGCTCCCGGTTTATTCGTGTCAACCCCGGCCTTTCTCGGTCGATAGAATGAAAGGATGGCCAAGCGGCGAGATGCGGACGAGGAGAACGGAGAGCTGATCGGCCCTGCTGCGGTCCAGCGAGATGCGACGCTGTATCCCGGGATGGCAAAAATGGACGgaatggaggaaagagggggaagtGAACTGTCTTTGGAGGAGATTTTAATGCTCTACAGCCAACCGATAAATGAAGAGCAGGCTTGGGCAGTGTGTTACCAATGCTGCGTAAACCTGGCGCAGGGACATAGGAGGAATTCTGGCCCAGCTGCCGGTGCATCAGTGGTGGATACTGCGAAGAGAATTGAGGGACCACAGGATGTGAGGATTCAGAAAGACGGAGCTGTCAAATTACAATATGAAGGCTGTGATGGTAAATCCATCCCAGCCACATCAACAGAGGTGATTGAGTCTCTGGGCATCATGATCTACAAGGCGTTGGACTACGGACTGAAGGAGAGCGAGGAGCGGGAGCTGAGCCCACCCCTGGAGCAGCTCATAGACCTCATGACCAACATGGGCGATGCTGAGAGAGACGCCTGCCCTGACGAAGGTTACGAGGCCaccgaagaagaggaggaggccgAAGACGACTCCATCAACATCTGTAATGTCCGTGGCTACAGGGACATCCTGAAGatgtgtgtgtctcacctcccCAGCCCTGGCGATGCCCCCAGCCACTACCAGGCTGTGTGCCGTGCTCTCTACGCTGAGACCAGGGAGCTACGCTCCTTCCTGGAGAAGATCAAGAGTGCCAAAGAGaatCTCCGGAAGATGGGTGGCGAGCCGTCTGAGGATCCCAGCAGAGACCTAAATGAGCTCCAGAATGCAGACTGGGCTAAGTTCTGGATGCAGGTGATGGGAGACCTGCGGAACGGGGTGAAGCTGAAGAAGGTCCAGGAGCGCCAGTACAACCCTCTGGCCATCGAGTTCCAGCTCACGCCCTACGAGATGCTCATGGATGACATCCGCTCCAAACGCTACAAACTACGCAAGGTCATGGTAAACAACGACATACCACCAAGGTTGAAGAAGAGCGCCCATGAGGTCATCCTAGACTTCATCCGGTCCAGACCTCCTCTTAACCCTgcAGCAGCCAGGAAGCTGAATCCCCAGCCCCAGGTTCCCCCCACCTTGCACGAGAGGATCCTGGATGAGATCAAATCTGAGAGGAAACTGAGACCTGTCTCTCCTGATGTGATCCGCAGGAGCAGGCTGGGTGGAGGCATATACTACAGCACTCCACAGTTGATCCTTACACGTCAAGATGTGTCCAGCCCTGATGGCCGCAGGAAGACTACCAGCACCATGACCCTCAGCAGTCTGTCCAATGGGAGGCCAGGGACACCAGAGGGTGGAGCCCAGGCCTTATGTCAGAGGAAGAGGCTGAAAGCGCCTACCCTGTCAGAACTGGACAGCTCCGACTCTgacGATGACATCACCATTGGGGGTCGAAGGTCAGCCAGTAGCTCCAGTGTCTCTACATCGGTGGTAGATGACACATCTCCAGAGTCTGTACTGGGCAGGAAGAcTCCACCCATGTTCCTGCCCATCTCCTCCACCCCCCAGCCTGAGAGAAGGCAGGCCCCCCAGAGGAGACACTCCATTGAGAAGGAAACACCCACCAATGTACGGCAGTTCATACCCCCATCCAGACAGAGCTCCAAGTCTCTGGTCGGGAGGATAGCCCATCATCTGTTCCCCtggacccccctcctcctccactcccctccctccaccctccaccccttACGGAGCTCCTACCCTGTCGAGGTGTTTGTCTTGGGCATGGTGTGGTCTGCCCTGTCTGCTCTGTGCAGGGGAAGAAAGCCTGTCAAGgagGAGTTCTGTTTCCCGGTAGAGTGCTTGTCCCTGACGGTGGAAGAGGTAATGCACATCAGACAGGTGCTGGTCAAAGCAGACCTGGAGAAGTTCCAACAGTACAAGGATGTGTACAACGCTATGAAGAAGGGAAAGCTTTGCTTCTGTTGCCGATCCAAAAGGTTTTCCTTGTTCACCTGGTCCTACACCTGCCAGTTCTGCAAAAGGCCTGTGTGTTCACAGTGCTGTCAAAAAaTGAGGCTGCCCTCCAAGCCCTATGCCAACCTGCCCATATATTCCCTGGGCTCTACCACCACTCTACCCAGGGACCGGGTAGCAGCCCTGGGGAAAGCTGCCAGTATAGCAGGTCCATCAGCCACCCCAACAGCAGCAGCAATTTCAGCAGGAAAAGGAAAAGCAACAGTTAAAGCAGCAGCCTCAGCAGcagcaacaggaccaagcagagCAGCGGCAGCAGCAGGACCAAGCAGAGCAGCAGCAGCCCTCAAGCCTGAGAAACCCTCTACCAGCCACCACCGCCTCAGCCTTCAGAAGACCATGTCCAAgTTGTCTAAACACAGTAGTCTGGAGAAGTCCCAGTCCCGTGATGAGGTGGAGCTCCCAGCGGAGCTGACGGAGGACTGGAGCACCATGGAAGTGTGCGTGGACTGCAAGAAGTTCATCCACGACATCATCTCCTCCAGCAAGCACAGCCTCTCCCTGGCCACCAAGCGGGCACGCTTAAAACGCAAGACCCAGTCCTTCTACATGTCGTCTCCGAAGGGAGCTGATTACCGACCCTCGGAAAGAACAATCAACGAGGTCTAGACTCTCCCCTCGTCCTTGTCTACCTTCTCCACTGTCTTCTAGCTGCTCCCAGAACTTATGGCACAATACAGAACTCTGATTGACTGGGTTTTGATCTGGATGACCTATACCAGTAGATGTGTCTAGTTTAGTCTGTCTGTCGATGCTGTCAGAGCGGGCTGTGGACCTTTACTTTTCCTTGGAGGAATGTGGACTGTGTAGTCAGTGCTTGTTGCCATGTCCTCTGATCGTTGCATAGAGTACCAGTACTTTCAGACAAAAGGATACTAGTCCATTTGATACAATATTTTGTTCAGTAATGTAAATGTTCCCGTAATGTTCTGCCATAGAGAGGTGGTTAAGGACACTGAATGATCAAATGTAAAGGATGAGGTAGTGTAAAGATTCAAAGCGGTATGGCCTTAATCACCCCCTATACTGTGGTAGGAGCTACTCGCCCACAGAAAAATCAATGAGCACAAGGCAAAATAACGCTCCATGTTTGAATTCCTCAGGCTGTGGTATTCTATTGTAAGAGAGTAGGTGTGATGCTAACAACACAAGTCCCATACTGAGAGCTGTGAACACCTTAAAGTGGAGACAATATGAGACAAAAGCAACAAACGATTGGATGATGACTTAAAAATATATGGAACTGTAGATGTTTTTTTTAACAAGTTATCATTTTCTACGGTATGGTATACATGTGTACATATGATTCGGCTTAGAGTCAGGTGGTTTGTGATGAAAAGTTGTCTCCCCTTTTTACTCTTCTTGACATGTTCAGGTTCTTTTTAGCTGACGGTACAATAATGAGTTATGCTCATTGATGTTCTCTGGGTTCTGAGCGGTCTTGATGAAGCATCATTTTTACCATAAAGAAAACAGGTAAACAAACAGCGTGTCACTTTGCTCAAAGTTGGATCATACCCATGAAGGTAGCCCAAACCTCTCCTTAGGCGTAGGGTCTACAGGACTGTCAGGTGTCAGCTTTAGTGCCAAAAGGATTCCCTTCTGTCTAAACCATAATATAAAACCCAAATAAGTATTTTTCTCTGGTGTAAATATTCATTGACCTTGCTATAGATAGCCATCGCAGCCCCCGATTAGAGCATGCTTCTGCAAAAGACGTCAGACTACTGAATATactaaccatagaaatagaatggttAGTATGTTGCCAATTACCATTGTTACATATTATTATGGGATATTAGAATCCCGTTGTCTTAACCTTTGGCATCTTCAATTTAGACCCAtgccaggaagtaaaagcaggatgtgtacccttcattctgtgctgtgatgttttgttgattcaactcaactgacatgACTAAATATGTTgcattgcatgagccacatcagttagcatcatttgaatgaacaGTCTTCATTACCATGGCAATCCAGCATCAGTTGATAGAACATTCCAAATAACCATGGACATTATTTCATTGCAATACCATGGAGCCATTGTGAGTGTACagatgagtttaccagtcaaatttcCAGGGTTAGAGCTTCCAACCCTGTTcaattcattctatttctatgatacTAACACTATGACATGATGAAGGAACAATATTAACACAGTATTTGTCACTGGTAGTTGAACACGCGTGATATCATTGAGCAGGTACAGTAATTGTGCTAGATAATCATAACAAAATCAGACACAAACAGTAGGAATCCCTTTTTGTCAAGACTTTATATAGCCTGTGCCCCCAAAAATAATCTAGTCTGTTACAGTAACAAGCATGCGCCCCCAGAAATATATTCATATTTTGTGAAAGAAATCTATACCTACTGTTATGTTGATTTTACTTATTGATGTAAGTTGTACATTGGTTTTTTTTGGTTTTGAATGGAATATTTCATATTGTGCAGATAAACACCCATATTCAATAACAGTACAACAATACATGAAATGATCTCAAATGGTCTTTCTTTGCTTTACAATAGTTATGGTATGATTTAACATGCTTAAAACCACCCTCTGTTTTATTGTATAGGCAGCAAAGCATGGTATTACACGCTACTCTACTGTTCAACTCAAAGCCTCAAAATGATGCCTTCATGAATTTGTATATCAGTTGTGTGTGACTGTGGTGTGTCTTAACCATACAGTTTGTCTCTAAACTCGAAGCAGAAGCATATTTCGGGAGCCAGGAATCAGGATGTATGTATATTAAAGTGACTATTACAAATCCAGTCTTGTTCCTTATATTTCTGCCTTCTTCTCTCATCATTAACATATTATTGTTGTGACAGATTGAATCCACAGTGACTcagcatactgtatgtaaatattatttaTAGTGATGTCCGTCCATAGAGCAGGTCTGTGTTTCCTTGACAACTTACATCACGACTAAAATCATTTAGACTTGAGGCTATTAACTTAGCCTAGATCCAAACTAAATTGCTCTGTTTGGTAAAGTTAAACAGAACTATTCAGGTAGGATCCAGGCTACTATTAACTAGCTTAGAGATTGTTTCTCACAAAACAAGTCATTGCAGGACAGAATATGGACTACAGTAAGTAGAGGTGATCTACTGTGTGCTACATAAAAGAAAGGCCCATATGTGACAGCAACATGCATGTACTACTGTGTAGCTTGTATCTTTAATCTGTTCAAACCTTCCAGATGTAACTCCCTCCAGGAGAGCTCAAGAAATGATGACAAAGAATAATAAAAATGTAATGCAATACCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264553 lncRNA upstream 22004 18697338 ~ 18698907 (+) True G231367
TU264550 lncRNA upstream 24753 18695903 ~ 18696158 (+) True G231366
TU264547 lncRNA upstream 38888 18681706 ~ 18682023 (+) True G231363
TU264429 lncRNA upstream 119021 18595943 ~ 18601890 (+) True LOC110511568
TU264469 lncRNA upstream 172153 18548528 ~ 18548758 (+) True G231288
TU264606 lncRNA downstream 21846 18815565 ~ 18816290 (+) True G231419
TU264637 lncRNA downstream 71058 18864777 ~ 18865465 (+) True G231449
TU264646 lncRNA downstream 78687 18872406 ~ 18872673 (+) True G231454
TU264653 lncRNA downstream 94658 18888377 ~ 18889148 (+) True G231460
TU264658 lncRNA downstream 98957 18892676 ~ 18893090 (+) True G231464
XM_021592297.2 mRNA upstream 506 18711636 ~ 18720405 (+) True LOC110511341
XM_021592320.2 mRNA upstream 28226 18687765 ~ 18692685 (+) True LOC110511366
XM_021592445.2 mRNA upstream 119006 18588699 ~ 18601905 (+) False LOC110511568
XM_021592444.2 mRNA upstream 119006 18596259 ~ 18601905 (+) False LOC110511568
XM_021592448.2 mRNA upstream 132663 18569698 ~ 18588248 (+) False LOC110511593
XM_036971031.1 mRNA downstream 8249 18801968 ~ 18813046 (+) False LOC110511268
XM_036971020.1 mRNA downstream 8250 18801969 ~ 18813046 (+) False LOC110511268
XM_036971013.1 mRNA downstream 8251 18801970 ~ 18813046 (+) False LOC110511268
XM_036971012.1 mRNA downstream 8252 18801971 ~ 18813046 (+) False LOC110511268
XM_036971025.1 mRNA downstream 9149 18802868 ~ 18813046 (+) True LOC110511268
TU264434 other upstream 134070 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 424806 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1921979 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2073327 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 2205018 16513503 ~ 16515893 (+) True LOC118944532
TU264626 other downstream 57530 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 432647 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1033411 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1765057 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1814574 20608293 ~ 20608725 (+) True G233545

Expression Profile