RNA id: XM_036971025.1


Basic Information

Item Value
RNA id XM_036971025.1
length 2411
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110511268
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18801968 ~ 18813046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacagaggattgTAAGTATGGGAGCATAGGCCCAGGCCCATCTGCCTCCTTCCAACAGAACACAGCCAGTCACTCTGTATGTATGGCAACTATTCACCGAGCTGAGCTGGTTTTCCGTTTCTGCTTGTGTGCTGGACAATGAGGCTTTGATCCCTGGCAGGCATTCAACCTAGATTTTGATCCATGGAGAATGCCTACAGTATGGTTAGAAACAGAACTCACTATAATGTGAAAGCTGCTGTTAGTCAAAGCAAAGGCCTTATGGTTAGTTAATAAAAGCTTCTCTACATCATGATGATGATATAAaacgtttgttgttgttgtatgctACAAGCTAGCGGTTCTCTCCAGCTGACCCCCATACTCCTGATTGCGGTGTCAATGGCTGGATCCAAACACTCCAGTGACATTGATCATGGAGCACAGCCCTCCACACTTCCTCCAGCAGAAGCGCTAAGAGAAGCTTCCAGGCAGTGCTGACTGACCGCTCTGCTCCCCCCATGGCCAACATCAGCAGTCCAGACCAGGGCCAGGGTCAGGGCCCCATAGCCAACAGCAGTTCAGCTCAGCCTCTGGGCCAGGCCGGGGCTGTAGTGGCCTCCTCCACCCAGCCTGATTTGGTGGTCTACTGCAAGCTGTGCCTTAGTGAGCACCCCTCAGCAGCAACCAGCACGCTGCACACCTGTGACTGTGTCTTCTGCACCCCGTGTCTGCAGCAGTATGTTCAGCTGGCCATCCGGGAGGGTGGGGGCAGCCCGGTCACATGTCCAGACATGGCTTGTCTGAGGACAGGAGTCCTACTCCACTCAGAGATAGCCTGTTTTGCCCCTGCGGATCAGGTTGAGCTGTACCAGCGGCTGGAGTTTGAACGAGGGGTGCAGCTGGACCctagtagagcatggtgcccgGTGCTGGAGTGCCAGGCTGTCTGCAGCGTCGGGCCCAGCTCAGAGGGCCAGCCTACGTCCGTTCCCTGTCCAGCCTGCCACACCGTCTTCTGCTCTGGCTGTAGAGGGCCATGGCAGGACGGGCACGCCTGCCCCGAGCACCAGCCTATGACATCATCATCTGCCTCAGAGAgcagCCTTCATGCTGGGGGCCGGTCATGCAGTGACTCTGATATGCCCATCAAGCAGTGCCCCATGTGTGGTGTGTACATCGAGAGGAACCAAGGCTGTGCCCAGATGCTGTGTAAGAGCTGCAAACACACCTTCTGTTGGTACTGTCTGCAGAACCTGGATGGTGATATATTTCTGAGGCACTATGATAAGGGGCCATGCAGGAACAAGCTGGGCCACTCCCGAGCCTCCGTCATGTGGAACAGAACACAGGTGGTGGGCATCCTGGTTGGCGTCAGTGTCATCGTGCTGgtggcctctcctctcctcctgctggcTTCACCCTGCATCCTGTGCTGCCTGTGCAAGCCCTGCCGAGGcaaaaagaagaggaggaagacgaaagagctcacacagacagacatacagccaGAACTCAGTCCCACCAAGTCACAAAGAAAGACTGCTCCTTCTTCTCACCACGGTCTGGGAATGGATCCATTGTCAATTCAGGAACTgattttaattaattaatgaaaACACTTAATTGAAAAGAATGGGGTAATTTCCAAATCATCGAATTTTAAATAATGTTATTGAATTGACAGAATTGAAAACTGACTAGTACCCAGATTCCcaacatctcacacacacatacagtacaggacCACTGTCTACCACCTTCATGTGCCAAATGTCACAATGCCAAACCAGTCTTGTTACAGTAGGTGCACAAGTGCCTCCATCCTACAGTGCCTGGTATTTGTTTTGCCTTCCATTATATTATGCAAAAATGTGTGTTGTTAATGAAAAGAACGACTGTATGTAACATAGGAAAATATCCTTAACCAATGCAAAACATTGTTTCATAATGTGCTGTGGAAGCATTGTGCTGTGGAAACTGCATTGTGCACTGTATTAGATACTGGGAGAAAAATGTgtacatccaaaatggcaccctattccctacatagtatgctacttttgaccagtcccTGGTCAAAGGTGTGCACTataatgggaatagggtgccattttggaagtaCCCAATGATATAGGGCTTCAAAGGTGCACATAGAAATATTTTCTGCTGCTGACAGATAGTTTCCACCTGGAATTCCAGACCAAATTTCTGTTGGAttctatatactactactactactataatgtaTGTAAATATGTATTTATGGAATTTTGTATATGGTGGCTCCTGTCTTTTCTACTTTTTTTTCGTTGATGTTTCTGCATCAGATATTTTGTAAAAGATCCATTGTAATTGAAATAAACATTAGATATTGAACATGC

Function

GO: NA

KEGG:

id description
K11975 RNF144; E3 ubiquitin-protein ligase RNF144

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264561 lncRNA upstream 9154 18792855 ~ 18793714 (+) True LOC110511301
TU264566 lncRNA upstream 27437 18774706 ~ 18775431 (+) False LOC110511301
TU264553 lncRNA upstream 103961 18697338 ~ 18698907 (+) True G231367
TU264550 lncRNA upstream 106710 18695903 ~ 18696158 (+) True G231366
TU264547 lncRNA upstream 120845 18681706 ~ 18682023 (+) True G231363
TU264606 lncRNA downstream 2519 18815565 ~ 18816290 (+) True G231419
TU264637 lncRNA downstream 51731 18864777 ~ 18865465 (+) True G231449
TU264646 lncRNA downstream 59360 18872406 ~ 18872673 (+) True G231454
TU264653 lncRNA downstream 75331 18888377 ~ 18889148 (+) True G231460
TU264658 lncRNA downstream 79630 18892676 ~ 18893090 (+) True G231464
XM_036970948.1 mRNA upstream 9149 18720911 ~ 18793719 (+) False LOC110511301
XM_021592246.2 mRNA downstream 5955 18819001 ~ 18826722 (+) True LOC110511248
XM_021592202.2 mRNA downstream 231261 19044307 ~ 19066203 (+) False LOC110511188
XM_021592207.2 mRNA downstream 231261 19044307 ~ 19066203 (+) True LOC110511188
XM_021592813.2 mRNA downstream 543726 19356772 ~ 19408498 (+) False LOC110512399
XM_036971061.1 mRNA downstream 543727 19356773 ~ 19408498 (+) True LOC110512399
TU264434 other upstream 216027 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 506763 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2003936 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2155284 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 2286975 16513503 ~ 16515893 (+) True LOC118944532
TU264626 other downstream 38203 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 413320 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1014084 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1745730 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1795247 20608293 ~ 20608725 (+) True G233545

Expression Profile