RNA id: XM_021592207.2


Basic Information

Item Value
RNA id XM_021592207.2
length 2599
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110511188
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19044307 ~ 19066203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTCCTATTTCGGCGTCTGTACATTTCCAGGAAGTTCTAGTTAACGCGGTGCATTCATTCAATCCTGTGCATTTACGTCCCAATTTCAGCTAGTAGATCGATAGATAGTTTATACAATACTTTATTAAAACTTGACACTCAAATGCGCAGAAGGACAGACGGTCATGATAGGCCATACCAAAAGGTAGCTAAAAAAAGactgacagacagactgcagGTTCAGGAGAGACCAGTCAACAACAACATCGACCACAACAAGGGGCTAAAACGAGCAGGTGCTGGTCGACTGTTACCTCAGTTGGAAAatgtctcctcctcatcatcctcatcccTCCCTTTCTGAACTATGCATCATTGCAAAGAGAGGGCCAACTGTTACTGCCAGAAGATGGTGAAATTATAGATATCGGTTTAGGTCAAAAGATGCACCTGATGTGCAAAGGACAAGGACAGCCAGTTGTCATACTGGATGCCCCCACTGGTATGTCCTCTGACATCTGGTTCCATGTACAAGAGAACATTGCCCTGCTAACCAAGGTGTGCACTTATGACAGAGTGGGACTGGGGTTCAGTAAAAGAGTCCTGCAGAATGAAAGTACAGGGACGGAGAAAGTCTGGGGGATGTCAACCACTGGACGAATGGTGGACAACCTCCACCGCCTCATCGGTTTAGCTGGTCTAGCCACGCCTCTCATCCTGGTGGGGTCTGAACTGGACACGCTCAACGCCAGGTTCTACAGCCATATCCATGACGCGCAGGTGTCAGACCTTGTCCTTATTGATCCCATTCCAGAGGACATCTTTGAGGAGGACCAGTGGCAGAAGTACTGGTACAGTCAGCGGGTACCATCCCTCCAAGCCATGCAATTCTCAGCTGCCACAGGCATCAGCCGCATCCTTATCATTCTGGGGCTGCTAAAGCCCGCCATCATGGGGGACAACATCGCTGAAGACCTCATACAGAGACAGAAGTACCTCCTCAGTAACCCCGCCCACCAGAGCAGTGCTGTAGATGAACATTTTTTTCTGAATGAAAGTGCCTCTCAAGTCAGGGAAATCTCCAAATTCAAACCCCTCTCCAGTAGGACTTCTGTGAGTGTGATTATTGGGGATTCTTTCGATGAGCAAATTCCTGCTCCTCTAAACCAAGTGGTGGCCCAGCTTCAGAAGACGTTACTGGAGCAGACTTACCCCTCGGCCAACCAGATCCATGTTAAAGGAGGGGACCGCAGGATGATCTACAAGAGGCCGTCTGTTGTTAGCAAACACCTGTGGAAGCTGGTGTCCCAACGGCAGTCCAAACAGCAGAGCCAATAACCATAGAGATCTATAGAAGACATCTAGTTCATATGCTCTAATTTCAAGGTTTGAATTCTGTGCCAGTGACACACTGATTCTGCTGCCAAATGTCTCAACTACACTCACAACTGGAAGATGAAGTCACGTCACAGAGGTTCCTTGTTTCTTTTTTTCAGGGATGATTTTTTGACTGGAATGTACTTGACATGTGTATGTCCACACATGAAACCAATTTTTTTTGTATACTTTATTACAAATATCAGACCGTTTTGCCTTAATGCTTGTAAATAAATACAGTCTTCTGAATTTGTATCTGTGTGTTAACTCTACTATCTTTCTGGGATCTATTCAGTCTGTAAAGCTGCAGCGTTACAGATCCCATGATAGAATGTAAAGGTGACGGTGTAAaagtaatttccgattgagccgacatatgcagtgtttaccatgaatgcagtgTCCTCTAAAGTGGAAACATTGACATTAAATTTGATTCACGCAATACAGATTGAACAAAGCCCTCTGTCCCTTATATCTAATGTACAGATCCACTACACTGGTACTGTGTTGTGGCTTTGAAAGAAAAGAGCGAACATCATTGGATTATCCTGAGGATTTCAGTTTAATTATGACACCACATCAAAATAAAAATGATTTCCAACAGTTCTGGAATTTTATTCCATCCATATACATGCATAGCAACAATGTTTTTTAAGAAACTTTTTTTCTCTCGCATAATTAGGACATTGGAATGATTATTTTACATCGGTATCCCCCGTCAACCAACATCCATCAACAGCAATAAATGTAATTATTGTACAATATAATGCAGTCCCCCTCTCATAATACTGCTTTCAGTAATGTTCCCTCATTTACAAAGTATTGCATCGAGAGTAAATGTTAAAAAGGGAGACCAAAGTGTAGTTCAGCAAACAGAAATATGAGTACTATACAAGAATGTTGCCATCCTCCTGAAAACATCCACGTCGGAGTTGAAGAAAAGAGACAGGGACACAGCCACATACGTATGCTAAGCCAAGTGTATGCCAAAACAGAAGATGCAGCTGGATTGTACCTGGCTATCCCACCAAAGGGTTAAGGCCAAGAATCCGAGTCATGAATAGCAAAGCTGCAAATGACATTTAGGCATATACAAAAACTGTTACAGCAAATAAGAATAGACAAGTGCTTCAGTAGCTATTTTGTGTCTAAAATGCATCTCATTTGTATTCTATCGTTTCATTGAGCCTACATTACAGTGTAAACAATATGTGTGCTACACAAGAATGACTATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265155 lncRNA upstream 809 19043284 ~ 19043498 (+) True G231906
TU265139 lncRNA upstream 10161 19033824 ~ 19034146 (+) True G231890
TU264749 lncRNA upstream 22667 19019813 ~ 19021640 (+) True G231550
TU264658 lncRNA upstream 151217 18892676 ~ 18893090 (+) True G231464
TU264653 lncRNA upstream 155159 18888377 ~ 18889148 (+) True G231460
TU265192 lncRNA downstream 37633 19103836 ~ 19104046 (+) True G231936
TU265200 lncRNA downstream 56008 19122211 ~ 19122424 (+) True G231944
TU265202 lncRNA downstream 60541 19126744 ~ 19127080 (+) True G231946
TU265203 lncRNA downstream 63503 19129706 ~ 19130051 (+) True G231947
TU265205 lncRNA downstream 67960 19134163 ~ 19134805 (+) True G231949
XM_021592246.2 mRNA upstream 217585 18819001 ~ 18826722 (+) True LOC110511248
XM_036971020.1 mRNA upstream 231261 18801969 ~ 18813046 (+) False LOC110511268
XM_021592813.2 mRNA downstream 290569 19356772 ~ 19408498 (+) False LOC110512399
XM_036971061.1 mRNA downstream 290570 19356773 ~ 19408498 (+) True LOC110512399
XM_036971156.1 mRNA downstream 601395 19667598 ~ 19674027 (+) False LOC110512421
XM_036971169.1 mRNA downstream 601395 19667598 ~ 19674027 (+) False LOC110512421
XM_036971162.1 mRNA downstream 601644 19667847 ~ 19674027 (+) False LOC110512421
TU264626 other upstream 192325 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 457466 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 748202 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2245375 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2396723 16643351 ~ 16647584 (+) True LOC110503770
TU265246 other downstream 160163 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 760927 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1492573 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1542090 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 2197872 21264075 ~ 21264506 (+) True G234322

Expression Profile