RNA id: XM_036971043.1


Basic Information

Item Value
RNA id XM_036971043.1
length 4999
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110511176
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19065512 ~ 19282368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAACCCCGCGCCAAATATTGGTGGTTCAAAATGTCTTGAGTATTATTTGGCTAACGACACAAAATGTGACATTCCACTAGTAATTAACAATTATGATATCACAATTCGGGTAGCACACGCTAAAAGTCAAGTTTAAGAAGCGGTGTCTACGGTACCCGTGGAGGCACAAACCTTATCTTCAAACAAAAGCGCGAAACGCTTTCACCTCCCCAGTCAGTCCGTGCGGATCGCAACTCAGTGCAGCCTCATCTCGGAGAACGCCATTGAgaaagagtgagtgaaagagagagagcgagctagagagaaatagagcagatcagaggaagagaaaagaaagagacagagcgacaTACTCTGTGAAAAAAAGTGTCCATAATTCGTCACCCTTTCTTTCTCAATTTCCATCACAAACCCTACCGGTGCTTGGATGAACCAAAACCTATCGATCAGTCAGTGCTACACCTGGATCTCCTGACCAGCTCCGAGCAGGCATGTCCCGAAGGAAGCAGAGCAACCCCAGGCAAATTAAACgtccCCTAGAGGATGGCGCcctgggggaagaggaggagtgtgtgtCGGAGGAGAACGAGCTCATGGCCAAAGATGAGTTCTCCACAGAGGATAACTTCTCAGCAGAGTTTGAGTCAGAGAACATGAGCTGTGAGGACATTGAGTTTTACTGCAACAAAGGTGAAGAAGATGGCAGTGGAGAAGCAGGGGAGTCAGACATGGACGGGCAGTGTGAGAAGACCAGACACCCAGCTATAGGACCAGAGGATTGGGATGGACCAAGAGAGCTGGATGCGTTCCACAAGGATGGGGAGCGTCGGATCCACAGCCGCCAGCAGCTCCCTGTGGGAACCACGTGGGGACCTTTCAATGGGAAGATCGAGATGAACATCGATGGCAGCGGCATGAAGATGAAGAGCTGTGTACCGGTGGTGCTCAGCGCGGGCCCCAGGTGGCTGCTGGATGTGACTTGGCAAGGAGCAGAAGACAACAAAAATAACTGTGTGGTGTACAGCAAAGGTGGCCAGCTGTGGTGTACCACCACTAAGAACATCATGGGGGGCGAGGAGCTAGTGGCGTTCGCCGTGGACTTTGACTCCCGTCTACAGGCCATCAACCACATGTCTCTGAGCGAGGGGATGTACCCGGCTAGACTGCTGGACACCATCCAGCTCCTGCCTCAGCAGGCCGCCATGGCCTCCATTCTGCCCACCGCCATCGTCAACAaggacaTCTTCCCATGTAAGGCGTGTGGGATCTGGTACCGCAGTGAAAGGAACCTGCAGGCCCACCTGATGTACTACTGCAGTGGCAGGCAGAGGGAGCCAGAGAGCCAAGGGGAGGAGAACGACAACAGACCCCACGAGACACCCAGCATCTGCCCCTTCCCACAGTGCAACAAGAGCTTCACCAGCGCCAGGGCCCTGGAAATGCACCTGAGCACGCACAGCGGTGTCAAAATGGAAGAGACGCTCCCCCCTGGCACCAGCTTGAAATGCACAATCTGTAACTACACGGCGGATTCTCTTATTACGTTCCAACATCacatcctctctcacctgtcaCAGGCCGCCTTCAGATGCAATCACTGCCATATCAGCTTTCAGAACCACAGGGAACTCTTGCAGCATCAGGACTTACACAGCCACCATGGCCACGGTGGTGGCAGCAAACTTCACAGGGAGAGCGACAGCGAGCACTCCCCCAGGGGGGCGGAGGAAGCCCTGCAGCAGGCGGCGGCCCGCGTCGAGCTGGCCAACCGGAAGGAAGCCCTCCAGAGTCCCAAAGGATCCCTCAGCAAGGACTCCACCATCGACAGCGAGCTGGAGAAGGCTGAGAAAAAGCCCATGCTGTCAGGGTTGAAGGGGGACGGTGGCCACCCGGGCAGTAAGGCCAGCTTCTCCTACACCCGGATCAAGTCTGAGCCCTCCAGCCCCCGCTTGGCCTCCTCTCCTGTTCAGCATAACATGGGCCCCACCTACCCCATGGGGCCCTTCCTGTCCCAGTTCGCTTTCTCCCAGGACATTTCTGTCGTCCCGCAGGCTTCTGAGATTCTGGCTAAAATGTCAGAGCTGGTGCACCGGAGGCTACGCCACGGAGGGAACACGGTCTACCCTCCGGTGATCTACAGCCCCCTCATCCCCAAAGGGGCCACGTGTTTCGAATGCAATATCACCTTCAACAACCTGGAAAACTACCTGGTCCACAAAAAGCACTACTGTAACAGTCGTTGGCAGCACATGACCAAGTCGCCTGACTTCTCCAGCATCTCAGACAAGGCCGTGAGCCCCAACAGCGGCCACAGCTCAGTCAATATGCTCACCGGATGCCACCCGTCTGAGGTCACCGACAGCCACCTGATGCAGTCGGCCTGTTTGTCAGTCAACTCTCAGAGTGTTCTGGACATGATCAATGCAGGAGGGGCAGTGAAAGGCCCTGGCCCAGAGAAGGAGCTCCCGGGGCAGGTAAAGAAGGTCTCCACCACCCCGACCGGGATGGAGGAGAGGCTGAACGGGAAGCAGCAGGCAGTGGAGGGGAAGAGCCCCACCAACACGCCTCTGGTGGAGACTGACGTCAACGACCCCAACCAGACTTCCTGTGCGGCCTGCAATATCACCTTTAGCCGCCACGAGACCTACATGGTCCACAAGCAGTACTATTGTGCTACGCGTCACGACCCCCCCATGAAACGCATGTCCGCCAACAAGGTTCCGTCCATGCAGAGAACCATGAGGACCCGCAAGCGCAGAAAGATGTACGAGATGTGTCTCCCAGACCAGGACCCGAGAGGACCCTCCATTGGGCAGCCAGGGTTCCTGGGGGTCCCTCCTATGGCGAACCCCTGTACGTCCCAGGAGGCGGTGGAGAGCCTGGCCGACCGCTTTCACCCTCGCTGTGACATCTTCCCAGGGATGGTCCCCAAACACCTGGAGGCTTCCCTCACCGTCACCAAGTCTATCATGGCCCCCAACAGTAATACCACTATGGACCAGCAGGAGCTGGACGCACCCATCGATCTCAGCAAAAAGTGCTCGCCGATCCCCAATGACAAGACATCGCCAAACTCTCCCAAAAGACTGTTAGACTATCATGAATGTACAGTGTGCAAGATCAGTTTTAACAAAGTGGAGAACTACCTAGCGCATAAACAGAACTTTTGCCCTGTGACCACAGCCTCCCAGCAGCACAGTGGTGAGACCATGTTCCCAGACGTGGTGAAGAATGAAGGCAGTAATCCTGATGACGCCTACGATAAGAGCCCATGTGAGAAGAACGGCAACGATAAAATGATTGTGCAGAATGGGGGTGGAATGTTCCCCCCTCACATGGGCCCAGTGCCGGGTCTCAAGCCCTTCAGCGAGGCTCAGCTCATCCCGACTAAAGACGAGAACATGTTTCTGCCCCACTGCCTTTATCCCGGCGCAATAAAGAAGATGAAAGGTGCCGAGCAAATATCGCCCTACTTCGGGATAAAGCCGACCGATTACGTGGCCGGCGGGCTGGTCATGCAGGGCGAGAGAGAGGTGAGCAGCGAGCAGGAGCAGAGCACTAATGGAGGGGGaccagagacggggagagagcaGCCTGCTGCCAACGGCTGCCCACTCCTCAGCAAAGAGCCACTGCCCCTGCTGCCCAAAAACAGGGGCATGGTGATAGTCAACGGTGGTCACAAGCCAGAGGAGCGCTCGGGATCGGGGCCCGTCCCACCCAACCAGGATAACCAATCCCACAATCCCCAGCAGCAAGACGGCCACCCCTCACCCACGTGGGGTGCGGAGAACCCGTCCGACTCCAACGAGAACGTGTCGCCCGCGTCCAAGTCTCCGACCGAGGAGACGGTGCCCACGGTGACAAAGGGTTTGAATGGGTCGTCCCAGGCTCCGGGCAGCGGGAAGTACTGCCGCCTCTGTGACATCCAATTCAACAACCTATCAAACTTTATTACCCATAAGAAGTTTTACTGTTCGTCACATGCTGCGGAGCATGTGAAATGAACTAGTTCCTGTTTAGTTTTCCTGTCCCTTCCCACTCCCCTTTTTTCTGTTTGGGTACACTGTCGTGTCTGGAATAATGCATCACTCACGCAGTACTAAACGCTGCTTGTGGACAATCAAGAGAGGCTTCTTCTTTCATCATTTTAACACCTCATTGCAAATCATtggttaaaaaaagaaaaaatgaaTCCAGAGTTGGTGCCactttcacatttatttattttacaatcagTATTAATAGTAGTGATCTTAATTTAAAATTCAAATGAAATTTATATCAGAGTTGTTTGTAATGTTATTGTATAGTCATTCTTGTGTAGCACACATATTGTTTACACTGTAATGTAGGCTCAATGAAACGATAGAATACAAATGAGATGCATTTTAGACACAAAATAGCTACTGAAGCACTTGTCTATTCTTATTTGCTGTAACAGTTTTTGTATATGCCTAAATGTCATTTGCAGCTTTGCTATTCATGACTCGGATTCTTGGCCTTAACCCTTTGGTGGGATAGCCAGGTACAATCCAGCTGCATCTTCTGTTTTGGCATACACTTGGCTTAGCATACGTATGTGGCTGTGTCCCTGTCTCTTTTCTTCAACTCCGACGTGGATGTTTTCAGGAGGATGGCAACATTCTTGTATAGTACTCATATTTCTGTTTGCTGAACTACACTTTGGTCTCCCTTTTTAACATTTACTCTCGATGCAATACTTTGTAAATGAGGGAACATTACTGAAAGCAGTATTATGAGAGGGGGACTGCATTATATTGTACAATAATTACATTTATTGCTGTTGATGGATGTTGGTTGACGGGGGATACCGATGTAAAATAATCATTCCAATGTCCTAATTATGCGAGAGAAAAAAAGTTTCTTAAAAAACATTGTTGCTATGCATGTATATGGATGGAATAAAATTCCAGAACTGTTGGAAATCATTTTTATTTTGATGTGGTGTCATAATTAAACTGAAATCCTCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265142 lncRNA downstream 30261 19034953 ~ 19035251 (-) True G231893
TU265134 lncRNA downstream 35619 19029435 ~ 19029893 (-) False G231886
TU265135 lncRNA downstream 35619 19029435 ~ 19029893 (-) True G231886
TU265015 lncRNA downstream 199206 18865221 ~ 18866306 (-) True G231771
TU265001 lncRNA downstream 247116 18817540 ~ 18818396 (-) True G231757
TU266200 lncRNA upstream 105664 19388032 ~ 19388986 (-) True G232835
TU266156 lncRNA upstream 122551 19404919 ~ 19408499 (-) False G232802
TU266157 lncRNA upstream 122551 19404919 ~ 19408499 (-) False G232802
TU266158 lncRNA upstream 122551 19404919 ~ 19408499 (-) True G232802
TU266238 lncRNA upstream 188838 19471206 ~ 19471551 (-) True G232873
XM_021592216.2 mRNA downstream 41360 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA downstream 41360 18826879 ~ 19024152 (-) True LOC110511207
XM_021592221.2 mRNA downstream 163039 18826879 ~ 18902473 (-) False LOC110511207
XM_021592238.2 mRNA downstream 230182 18826879 ~ 18835330 (-) False LOC110511207
XM_021592293.2 mRNA downstream 268143 18793985 ~ 18797369 (-) True LOC110511312
XM_036971122.1 mRNA upstream 133686 19416054 ~ 19424630 (-) False rims2a
XM_036971115.1 mRNA upstream 133686 19416054 ~ 19424631 (-) False rims2a
XM_036971108.1 mRNA upstream 133686 19416054 ~ 19582363 (-) False rims2a
XM_036971097.1 mRNA upstream 133686 19416054 ~ 19582365 (-) False rims2a
XM_036971132.1 mRNA upstream 133686 19416054 ~ 19582365 (-) False rims2a
TU264859 other downstream 463637 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 934458 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 935426 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 1087603 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 2017168 17045025 ~ 17048344 (-) True G229707
TU266171 other upstream 259734 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 365718 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 473836 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1269415 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 1366403 20648771 ~ 20651696 (-) True glipr2l

Expression Profile