RNA id: XM_021592813.2


Basic Information

Item Value
RNA id XM_021592813.2
length 5203
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110512399
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19356772 ~ 19408498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTTCATGGAAACAAACACACTTTAGGCCTACTGCAAGTTCATTTCTTTGTCACTTTCTACCAGACAATTTTAACTTGCTCATCTGTGATCTGGATAAATTGAGTGATTTTTTTTATAGTAGTAATATCCTTGGGGACCACGGCCCTGCAAGTCTGGTCAAGTTTTGTAAATAGTGCGAAATCTAGGCTACTTCCTGGGAATGTTTTTTTGTAGGAGGTGTGTCTACTTGTGAAATATTTGTTTGTTGTGTAACCCATACCTAAGTGACATTCTAGACCTACGCCCAGTGTGTCCCATACCTAAGTGACATTATAGACCTATGCCCAGCGCTTCTAAAAGGGAAAGAATGTTAAACCAAAGCAGGATCCTTATAAAAGGAGGGAAAATTGTGAACGAGGATTGCTCCATTATCAGCGATGTCTACATTGAAGACGGAAGAATTAAAGAAGTCGGATTAAACCTCCAAATCCCTGCTGGAGTTACCGTTATAGATGCCACAGATAAACTGGTGATACCGGGTGGTATCGATACCCATACCCACATGGAGTTGGCATTTATGGGCACCAAAGCAGTAGATGATTTCCATATTGGAACTAAGGTCAAAAAGGAAATGGAGACTTTGGCCAAGGAGAAAGGTGTCAACTCCTTCAAGATGTTCATGGCATACAAGGATGTGTTCATGCTTCAAGACCATGAGCTGTATGCTGCGTTTTCCCAATGCAAAGAGATTGGAGCCATAGCCCAGGTGCACGCAGAGAATGGAGACCTTATTGCAGAGGGGGCTAAGAAGATGCTGTCCCTGGGCATTACAGGTCCGGAGGGTCATGAGTTGTGTCGTCCTGAGGAGGTGGAGGCTGAAGCCACCCAGAGAGCCATCACCATCGCCCACGCTGTCAACTGCCCGCTCTATGTTGTCCACGTCATGAGCAAGTCTGCCGCTAAGGTGGTGTCCAACGCACGCAGAAATGGCCGTGTGGTGTTTGGAGAGCCCATAGCAGCAGGACTAGGTACAGATGGCACCCACTGCTGGCACAAAGACTGGGCCCACGCTGCCAAGTTCGTCATGGGCCCACCTCTGAGGCCCGACCCCAGCACCCCGGGATACCTTATGGACCTACTGGCAAATGATGACCTCAGCGTGACTGGGACAGACAACTGCACATTCTCTGTGTGTCAGAAAGCCCTGGGCAAAGACGACTTTACAAAGATCCCCAATGGAGTCAACGGAGTGGAGGACAGGATGTCTGTCATTTGGGAGAAGGGCGTTCATAGCGGAAAAATGGACGAGAATCGATTTGTAGCTGTCACCAGCAGCAATGCAGCGAAAATCTTCAACTTCTACCCCCAGAAGGGAAAGATCGCTAAGGGATGTGATGCTGATGTGGTCATATGGGACCCTGAGGCAACCAGgaagaTCTCTGCAGCTACGCACCACCAGGCTGTGGATTACAACATCTTTGAGGGCATGGAATGCCACGGTGTTCCCGTGGTGACCATCTCCAGAGGGAAGGTGGTCTATGAGAGAGGTCAGCTGAAGACCCAGCCAGGACAGGGCCGCTTTGTCCCCAGACAGCCCTACGCAGAGTTCATCTACAAACGAGTCAACCAGAGGGAACAGGTGGGACAGCCTAGTCCTGTAATCAGGAAGCCCTATGATGGTGAAATCATCGCCATATAAAGGAATGGATCTCATCATGCAAGAGACTGTTTAGCTCAGGATCTACATGCAAAACGTTCGGTGAATTGTGTTATGCTGGACCATGATAAAATGCATGTTTGTTTGAATGCAGATGCCAGTCAATGTTTTGATGCTGATGATATTATGTTGCCAAACTATTTTGTCTACCCTTACTTCCGTGTTAAAGTATGAAGCGCACAGTGTTTCACATTGAAAGCTCATATCCACTTGAGCTGACATCCACAGCGTTTACCATGAACATGAGCTTCACAAACTCTGGGGAAAATTGTGTGTAGTTCAGCGCGCAGTGCTGCAATGTGCTTGGCCTTTGTAAAAAAGGCCCAGTGCTGTTGTCACACAGCATCACATTACACATTGGGATTGTCTCCTACTGGGCATTCTGGCATGCTGGCGTGGTACTGAGCCACTGGGGCTCTGCAGACATAATGTGAGTTTATCAGAGGGAACGCTAGGGGTCAGTGGCAGCAGTGTGTGAGTCACAGTCGGCCCACTCATCTCTGTGCCTTCTCCTtcactctgtctcctctttcactgtgccttctccttcactgtgccttctctttcactgtgccttctccttccctctgccttctcTTTCACTGTGCCTTCTCCTTCACTCTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCTGTCACTCTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCTGTCACTCTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCCTTCACTCTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCTCCTTCACTCTGCCTTCTCCTTCACTCTGCCTTCTCTTTCACTGTGCCTTCCCCTTCACTCTGccttctcctccttcactctgccTTCTCCTTCACTCTGCCTTTTCTTTCACTGTGCCTTCTCTCAGTAACAGACCTGGGTTAAAATAGTATACATTTTCTTTCAAACACTTACACTGCACTTTACTGAGTTGACCTGCCTGGCACAATTGAGCAATGACATGTACAATTGTGCTATTAGGCAACATTTTTCACATGATCCTTTATcttcatatacagtggggtctgacATTATTGAagcccttgataaagatgagcaaaaataaTTAAATCATTCATATACTGTGCtccccaatttaaaaaaaaattctattattttatactaatacactTGCTGAAGAGAAAAGGTAAGGgtaaaaatgattgacaccccggttttcaatacctttcaatatcTCACCTTGCCAGGATAACGGCACTGAGCTTTTTTCTAAAATATTtaatgagttggagaacacattgggagcgATCTTAGACACTTCCTGCATACAGAATCCtttcagatccttgatatccttagtctgcgtgtcacgttctgaccttagttcttatattatgtctttgttttagaatggtcagggcgtgagttgggtgggttgtctatgttcttttttctattgaTTTAGGATTGctgtgttcggcctggtatggttctcaatcagaggcagctgtcaatcattgtcccaGATTGAGAGTCATACTTAGGGAGCTTGGTTACACTTTTTCCGTGTTAGTGTtggtgccacacgggactgtttcggtttgataacttcacgtttattgttttgttcagtgttcgttactttattaaaaaacatgaacacttaccacgctgcgctttggtcctcaccttcttccaccgacgacgacCGTTACACTGCGCTTAtgaactgccctcttcaattcaaaccacgtTTTCAGATGGGGTTCATGTCTGAGATTGCCATTGCAAAATGTCGATTTTTGTAGACAATTAactatttctttgtggattttgatgagTGCtttgggttattgtcttgctaaaCGATCCACTTGAGgtcaagtttcagcctcctgtcAGAGGCAACAAGGTTTTAGGCTAAAATGTCCTTGTACTGGGTAAGGATCATGATGgcattgaccttaacaagggcccctgGACCAGTTGaggcaaaatagccccataacatcaaagatctatcaccatattttacagtggGTATGGGGTGCTTTTCTGCTTATGCATTCTCATTTAttagctctattttcatgtcatccaacaaatgtaaatgcctggagtttgctaaaatgGCATTGGCAATTGGATTGGAACcagtgctttggtcagatgacaaaaaaaatagagctctttggccggGCACGCCAGTTGTGGGTTTCGCGTCGAAAGAAGAATTTGCcacaaaaatcaacattttgcaattgcCAACTCAGTTTCCggacttgaaacccattgaaaacatGTGGTTTGAAATTATTAGTGCAGTCCATAGGAGCAGACTTAGGATATCAAGTATCTGGAAGTATTCTGTATTGAGAAATGGTTTAAGATCCCTCTcgatgtgttctccaactcataaaacaatttggaaaaaggctcagtgccattaTTATTGTAACGCTCGtcggaagaagtggaccaaggtgcagcgtggtacgtgttcatgattctttAATTCATCCGAAcaccaacaaaaacaacaacgacCGTCACGTTCTGAAGGCTACACAGAGCTAACAAAAACCAACATCACACaacctaaggtggcaaaacaggctgcctaagtatgattcccaatcagagacaacgatagacagctgtccctgattgataaccatacccggccaaaacatagaaacacaaaaacGAGAAataaggaacatagaatgcccacccaaatcacaccctgaccaaaccaaatagagacataaaaaggctctctaaggtcagggcgtgacaattctTGCAAGGTGAGATATTGAAAGGTATTGTTAACAGGGGTGTCAATATTTTTTACCCCTAACTCTTTGAGAAAAAAattatattacttgttaaacacaATTGTTCTCtcagcaattgtattagtataaataatataatttcccaattttTTGGAGTATAGAATGTAGCtcagtattttaattatttattttatgcaGTCATAATTTTGAACCCCACTGTAAATACCTTGAGACAAAATAATCtggtaaatgtcatatttcaacGTTACGGAAGCTTAGAGGGGTACGTCTCCTGACTGACTGTCAGCATTCTGTGAAGGGGGATGTGTCACTGTCAGGACCCACTACAATCACCGTGGTAGATGCGCATTGTGGCGTCTGGATATAATGCTAATGGGGTGTGACTAAACACCAAGTGCATGATGGGAACTGAATAGTGGCGTGCACATTTAGGGAAGGTCTGGTTTGCGTGATGATGTCAGCAAAACTGTCCCTGTCGTTTTTGATCGACATTAAACAACTGAAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265428 lncRNA upstream 62276 19291600 ~ 19294496 (+) True G232148
TU265259 lncRNA upstream 105736 19250593 ~ 19251036 (+) True G231996
TU265250 lncRNA upstream 112922 19235893 ~ 19243850 (+) True G231987
TU265237 lncRNA upstream 136141 19215419 ~ 19220631 (+) False G231979
TU265241 lncRNA upstream 136141 19217821 ~ 19220631 (+) False G231979
TU265506 lncRNA downstream 5479 19413977 ~ 19418583 (+) True G232215
TU265599 lncRNA downstream 152711 19561209 ~ 19561545 (+) True G232297
TU265620 lncRNA downstream 191129 19599627 ~ 19599873 (+) True G232317
TU265621 lncRNA downstream 191675 19600173 ~ 19600379 (+) True G232318
TU265624 lncRNA downstream 195765 19604263 ~ 19604688 (+) True G232321
XM_021592202.2 mRNA upstream 290569 19044307 ~ 19066203 (+) False LOC110511188
XM_021592207.2 mRNA upstream 290569 19044307 ~ 19066203 (+) True LOC110511188
XM_021592246.2 mRNA upstream 530050 18819001 ~ 18826722 (+) True LOC110511248
XM_036971020.1 mRNA upstream 543726 18801969 ~ 18813046 (+) False LOC110511268
XM_036971156.1 mRNA downstream 259100 19667598 ~ 19674027 (+) False LOC110512421
XM_036971169.1 mRNA downstream 259100 19667598 ~ 19674027 (+) False LOC110512421
XM_036971162.1 mRNA downstream 259349 19667847 ~ 19674027 (+) False LOC110512421
XM_036971191.1 mRNA downstream 259392 19667890 ~ 19672755 (+) False LOC110512421
XM_036971153.1 mRNA downstream 259398 19667896 ~ 19674027 (+) False LOC110512421
TU265246 other upstream 122477 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 504790 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 769931 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1060667 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2557840 16794699 ~ 16798932 (+) True LOC100653482
TU265650 other downstream 418632 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1150278 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1199795 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1855577 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1878228 21286726 ~ 21287002 (+) True G234340

Expression Profile