RNA id: XM_036971122.1


Basic Information

Item Value
RNA id XM_036971122.1
length 3693
RNA type mRNA
GC content 0.42
exon number 6
gene id rims2a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19416054 ~ 19652601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatgcatgcatgtgtgtgtgtgtgtgtgtgtgtttttgtatccgtgcatgtgtgcgagagagagagtagctaGTGAGGTTCAGTGAGTCGAATCTCTGGGTAGAGCTCCTTTGCCTGGAGAGGCAGCCGAGGTGCGCCTGAGCAGTGAGCCTTCTGATTGGCTGAGGAGGATGCAGTttgcccccccctctccttctcccaattgtgttagaagaggagaggggggagaggagctgAGTAGCAGGCACATAGCACAGAGCACTAACACGGAGCAGAGAAGCAAGCAAGCTCTTTCTCAACCCAGTCTCACACTACGCAGCACAGGGAGACAACACAAAGAGCTACATCAGAGAGTCATTCTGCTACTATAGCACCATAGTCTTCTCTTGGGCTTTAGCGTTCAACTAGTTCTTCAGTTATCCTCTCGGTGCACGGTAGAGCTGTCTGGAGACCTGTAACCTCCACTAGAAGGCCACTTGACTCAGGTGATCAGTGGTTGATCAGTGACCATGGGTAGGCAGGGGCATGATGCCACTGCAGCGGCTGGCGCCCCGGGGTCCGGGATGCGCATGCAGCGTTCCCAGAGCAAGATGAGCCTGTCTGCGTCGTTCGAGGCGCTGGCCAACTACTTCCCCTGCATGAACTCCTTCGACGAGGATGACGGAGCCGGTGGGAAGAAGCTTCGCAGCACCGTGCAGAGGAGCACAGAGACGGGCTTGGCCGTAGAGATGAGGAGCAGGATGACTCGGCAGGCCAGCAGAGAGTCCACCGACGGCAGCATGAACAGCTACAGCTCCGAGGGAAACCTGATCTTCCCTGGTGTGAGACTGTCCTCCGACGCCCAGTTCTCTGACTTCCTGGATGGACTAGGCCCAGCCCAGCTGGTTGGACGGCAGACGCTAGCTACACCACCCATGGGTGACATCCAGATTGGAATCGTGGACAAGAAAGGAGCGCTGGAGGTGGAAGTGATCCGAGCCCGTGGCCTTGTGGGAAAACCAGGTTCCAAGGCACTGCCAGcACCATATGTAAAAGTGTATCTTTTGGAAAACGGAGCCTGCATAGccaaaaagaaaacaaaagtaGCAAGAAAAACCTTGGATCCCCTTTACCAGCAGCAACTGCCTTTCGAAGAGGCTCCTGGAGGGAAAGTTCTACAGATCATCGTATGGGGAGACTACGGACGCATGGACCATAAATCCTTTATGGGAGCAGTTCAGATACTTTTAGATGAGCTGGACCTGTCTAACATGGTGATTGGCTGGTTCAAGCTCTTTCCTCCTTCCTCATTGGTGGACCCTACCCTGGCCCCCTTGACAAGAAAAGCTTCCCAAACGTCATTGGATAGCCGGTCATAGCAGTGTGTGGACTGATAGCATTGTTGTAGCAGCAGCACCCAGTGTTGAGGTTAAACATGCTGCGACAGACAGGTCACGCCCCCCGGTTACACTGCATGCTTGATGTTGTGTCTTCTGAGCCTGTTTCTAGGGGTGCAAATGTGATCCTGTGTTTTGAGAAAAATGTCGCACACATTGTGCGTAGCGAGCGTCGCTCCCTCGGCCGGGTCTGAGCACCAGCTCGGATTAGAAGGCCGTAACGGACTCCTTAGCACCAGGAATTGTCTCTAAATCGAGCGATTCCAGGTTTTCATCCAATCTAAGCCATGGGGGTCAGAACTGGGAACCCGCTCGATGAGTTCTACAGAAGCCCTTTTCGaatgaaaaatacatgtttttgtttataatgatttttttttgttttttgtttgttttattgtcGATGTACTTGTATACCTGAAGGGGTGACTGACAGTGTTGTCCTGTCCAGAAGCTTGGTCACGCCAAGCCAACAGACCTAGCTAGATGTGTAAATGGAACTATGAGGTTCATTGCAATTGGAGAGGTGGGGTGTCCCAACTAAAGCTCAAACTTCGAATATGAGGCCCTAGTCAAAATAGTAGTAGATCACACCAGAGAGACAATACTAAAGTTACTAAAGGCAATACAGAAGTGGCTACTGTACTATCGACACTCCAGAATCTATTGATCAGAACCCACAACAAGACTAACTTTTATGACCTAACATTATTATTTCTCTGTTGATATATTGTATGACATTTAAatgaagatttaaaaaaataaaaaaaaacatttttgcatgGACAAAAATTTAGCTGAAAAAAAAAATGACCATTATTTTCTTGAGGCTGCGACTTGCAAAAAAAGatgaagaaaaacaaataaaacacatCAGCCATTTTCAACAAtttatattatttttaaatataaatttCACTAGTGCATGGTTTTCAAAGGGGAGTGAATGCAACAGCGTGATAAAAAAAGACACATTGTTTATCATTCTTTAGACCATCCATAACATAAGTCTGTGTTTGGCAGACATACAGTAAGAGAAACTAAAATAAAAACTTTTGGAGTTatttaacaacaaaaaaactgtttATGTGACAAAGTGATGATGAAAATAAatgtaaattatttatttcattgcAAAGGTTTACAAGCCTTATAAAGATAAACATTATGTGCAAATTGTAcacgtctctttctctcccttgtcCCAGGGCGTCCCCCTGATATTGTCCAGAGTTTCAGGACTGTTGGTTCTTTTACAGCTCTGTATCGTTTCAATATGTCTTTTTTGGCGATTTGTTTAACAAGCATGTTGAAAAGGATTTTCTGCAACATGGCTTGGGCACACCTTAAAGTAACTCAGCATGTTTTGATAAAGAGGATGTTTGGGAGTTTTGCAGTTTCTTGTACAGTGCATGTCAACTTCGTTACTTCCCCCCCCTCACCTTCAATTGAATTCTACAGAAAATTCATTAGTTACTTTCATGGCCAAACTATTAAAACGTTTTAACAAAACATTCCACTAACCCTTAGATCATATTTTATTTCCATTTTTTCAAAAAGAATGACAaggaaaaatattttatattcgTTGGAGGTTGACAAAAAAAGTTATGGTTGCGAGTGTATTTTATTTCAGTATTGTTAACTAACATGCAAAAATAATCTGTATTGGTACAGCAAGAAAGATATTTATATCCAAGCAAGAAGCGGCAAACATACAacttatgtactgtatattgctgTGTAGTTCAGGCACTGTTTGTGAGGATGAGCAAAACACAAGGTCAAACAACATGGGATATTGCCACACAATAtgaatttagttttttttgtttttgtgaaaatataattaatttcatatatttttattaGTTTATTTATAAGCCAAgaccagtttattttttatttttagtaatTGTAAATGCTTCTTGTGTATGGGAGGTATATGAATCTTACAGTTATGTCTGAATGAAAATAAACTGAGACGTTATTCCTTTTCCATGTTAAACCTATACATTCTAATGTCCATTCAATATCTTGTCGCTATAACAAGCTATATACTTTCGTTTTTGATTTACATTGTACATATTAGAAATTTGAATAAAACAAGCAAACACAAATAGATGACAATATTTTGGAATAGGAATAATGTCTCACATGATGACAAAGACATGTGTTATTTACCCTTTTGAATGCCTTTTCTTTCTTTTGTTTTGGTGCAATGTGTTTATGCCAAGGCTATGTCTTGGTGAAGTATGGTTGAGTACAGAGATTTATGTAAGttatttttcaaataaaaaatggATATTACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266156 lncRNA downstream 7555 19404919 ~ 19408499 (-) False G232802
TU266157 lncRNA downstream 7555 19404919 ~ 19408499 (-) False G232802
TU266158 lncRNA downstream 7555 19404919 ~ 19408499 (-) True G232802
TU266200 lncRNA downstream 27068 19388032 ~ 19388986 (-) True G232835
TU265383 lncRNA downstream 182537 19225570 ~ 19233517 (-) True G232105
TU266238 lncRNA upstream 46576 19471206 ~ 19471551 (-) True G232873
TU266249 lncRNA upstream 61182 19485812 ~ 19486777 (-) True G232883
TU266265 lncRNA upstream 84549 19509179 ~ 19510193 (-) True G232898
TU266289 lncRNA upstream 128505 19553135 ~ 19554542 (-) True G232921
TU266340 lncRNA upstream 209334 19633964 ~ 19634713 (-) True G232971
XM_036971043.1 mRNA downstream 133686 19065512 ~ 19282368 (-) False LOC110511176
XM_021592216.2 mRNA downstream 391902 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA downstream 391902 18826879 ~ 19024152 (-) True LOC110511207
XM_021592221.2 mRNA downstream 513581 18826879 ~ 18902473 (-) False LOC110511207
XM_021592238.2 mRNA downstream 580724 18826879 ~ 18835330 (-) False LOC110511207
XM_021592817.2 mRNA upstream 230653 19655283 ~ 19667465 (-) True LOC110512409
XM_036971255.1 mRNA upstream 337746 19762376 ~ 19785561 (-) False LOC110512480
XM_036971271.1 mRNA upstream 339874 19764504 ~ 19785552 (-) False LOC110512480
XM_036971265.1 mRNA upstream 339874 19764504 ~ 19785554 (-) True LOC110512480
XM_021592859.2 mRNA upstream 418080 19842710 ~ 19851098 (-) False LOC110512516
TU265301 other downstream 133916 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 814179 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 1285000 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 1285968 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 1438145 17975245 ~ 17977909 (-) False LOC110505118
TU266171 other upstream 117472 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 223456 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 331574 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1127153 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 1224141 20648771 ~ 20651696 (-) True glipr2l

Expression Profile