RNA id: XM_036971108.1


Basic Information

Item Value
RNA id XM_036971108.1
length 6099
RNA type mRNA
GC content 0.48
exon number 21
gene id rims2a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19416054 ~ 19652601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caGCAAGCGTGTGCGTGAACGAAtgcttgtgtgttgtgtgtgtatttgtatgtgtgtgtttgaatgcgTGCTCTAATAGGCAGAGAGAAATATGAGTTGAGTATGAGCTGCCCCTGATGCACCGGTAAGTGAAGCTTGCTTTGCTGGAAGATGCCTCGCTGCTGCTTTTTCCGTTCTCTTCTTCCTCACCTCCACTGCAAATAGATCCTGCTACAGCCCGCTAGATTTTGTCGGGTTAAGTTCGGAGCATTATGACTGTACATTCCAGCCTCGACTGCTTTTCATTTAAGGACTCTTTCTACCAAGATCAGGAGAAATATGGAACTTGATTGAGCGTCTTCGCGTTTAATGCGTCCCTGGAGATAGACAGACGCGGGTCCGGACGGAGAGCGAGGCAGCGCAGGTGGATGCATTGTGTTTGATGAAAAGGGCCATATTGTGGATAAAAGACACGAAGGAAAAGGGAGGAAAATGCAGTTTGATACATTGCGTCAATTTTGTAGCTCCGTTCTATCCCATTTTAATGAGGCTTTTACGCCGCCTCAGAACATTCTGCAGACGGAGCTATTCGAGCAGGCGTTGAGCAACATCGGGAAACGAAGCCCATCAGCATCCAGGGATCCAAACCAAAGATACGACCAAAGGGAGGAGCGGGGTCAGTATGCCCCGGGGGACGGCACCATGCCCAGATCACCGTCCGACTACGGGGATGGGGACCCTCGGCGTGGGGCCCCACGGAGGTACCAAGACGCTGAGGCAGCGCGGGGGGAGTACCGTGGTGGACGTGGCCGCTGGCGCTCCCATGAGGACTACCCTCTGGACCAGGACGGGCCCTACCCTCTAGACGGGCCCTACCCTCTAGACGGGCAGCCCAATGAGTACGAGCTGCAGCGCCAGCGCCAGGAGGAGTACCAGACACGCTACCGCTCCGACCCCAACCTGGCCCGTTACCCCGTCAAGCCCCAGCCCTACGAGGAGCAGATGAGGATGCATGCTGAGGTGGGCCGGGCCAGGCACGAGAGGCGCCACAGTGATGTGTCTCTGGCCTACACGGAGCAGGACGAGCCCCAGGGACCAATCCGCCTGTCCAGACAGCACCTGACCGAGCGCCGGCCGCCCATGGTGGGCCAACGCTCCTACTCCATGGACAGAAACTCCCCCACCCCTGGAGGCCACCCCCGGACCTCCAACCAcagcccccccaccccacaccgcAGCCCTGTGCTGGGGGACAGGTCAGGGGACATGAGGCGGGGGCCAGGGGAGCCAATAGGGTTCAGGGGTCATGATTATCTAGACCCCAGCTCTGCAGTCAGGAAGACCAAGAGGGAGAAGATGGACACCATGTTGAGGAACGACTCTCTGAGCTCTGACCAGTCCGAGTCCATCAGGCCGCCGCCACCAAAGCCCCACAAAACCAAAAAGGGGGGTAAGATGCGGCAAGTGTCCCTGAGCAGCTCGGAGGAGGAACTGGCCACCACGCCGGAGTACACCAGCTGTGAGGACGTGGAGATAGAGAGTGAGTCTGTCAGTGAGAAAGGAGATTTGGATGGCCACTGGTTGGACCATGCTTCATGGCATAGCAGCGAGGCCTCCCCAATGTCTTTGCATCCAGTGACATGGCAGCCCTCCAAAGATGGGGAGCGCCTAATAGGGCGGATTCTGCTCAACAAGCGGATGAAGGATGGAAGTGTACCTCGAGACTCAGGAGCACTGCTGGGACTGAAGGTGGTGGGTGGAAAGATGACAGAATCTGGTAGACTTTGTGCTTTCATCACTAAAGTGAGGAAAGGAAGTCTAGCGGATACTGTTGGACACCTCAGACCAGGCGACCAGGTGCTGGAGTGGAACGGGAGGTTTTTACAAGGAGCCACATTTAAAGAAGTTTACAATATCATTCTAGAATCAAAGCCAGAACCCCAGGTGGAACTGGTGGTCTCTAGGCCCATAGGAGATATTCCTCGGATACCAGACAGCACACATGCACAACTGGAATCAAgTTCGAGTTCCTTTGAGTCTCAGAAGATGGATCGCCCCTCTATCTCTGTCACGTCTCCCATGAGCCCCGGGATGCTGCGGGACGCCCCCCAGTACCTGTCAGGACAGCTCTCAGTCAAACTGTGGTATGACAAAGTGGGCCATCAGCTAATAGTCACCATCCTGGGAGCCAAGGACCTGCCTTCTAGGGAAGATGGCCGCCCCAGGAACCCTTACGTCAAAATCTACTTCCTCCCTGACAGAAGCGACAAAAGCAAGAGGAGAACAAAAACGGTAAAGAAATCCTTAGAGCCCAAATGGAACCAGACCTTTATGTATTCTCCTGTGCACCGGCGGGAGTTCCGTGAGCGCATGTTGGAGATCACCCTGTGGGACCAGGCCAGGGTCAGGGAGGAGGAAAGCGAGTTCCTGGGAGAGATACTGATAGAGCTGGAGACAGCCCTGCTGGATGATGAGCCTCACTGGTACAAGCTGCAGACCCACGACGTGTCCTCCATGCCCCTCCCCCGCGCCTCGCCCAACCCCCAGCGCAGACAGCTCCACGGAGAGAGCCCCACGAGGAGGCTACCCATACAGAgaTCTCAGAGAATCAGTGACAGTGAGATCTCTGACTATGACTGTGAAGACGGTGTTGGTGTAGTGTCAGactaCCGGCAGAACGGCAGGGACCTACATAGTTCCACGTTGTCTGTCCCCGAGCAGGCGATGTCATCCAACCACTGCTCGCGGTCGGCAGACATGAACCGGGCGCGGTCGCGGTCCCCCAGTGTCCCCCCTCCACAGAGCAGAAGTCTGGACCCCGGCTATGACATTGACCCCGCCTCGTCTCAGTACAGCTCCTCCAGTAGAGTGGACCGGCGCAGTGTGTCCGATGACCACCACTCACCTGACAGCCATTTTCTCACCCTACCTCGATCCAGACGCTGTCAACCTAGTGATGATCATCAGAAGGAACCCAGGGCGAACCCCCGCAGCGGATCGGCCCAAACCAGCCCTACCAGTACCCCCATgtctgacaggagaggaggtCGGCAACTACCACAGCTTCCACCCACAGGGACCAAGGGCAGAAAAGCCGGTGGGAAGAAGCTTCGCAGCACCGTGCAGAGGAGCACAGAGACGGGCTTGGCCGTAGAGATGAGGAGCAGGATGACTCGGCAGGCCAGCAGAGAGTCCACCGACGGCAGCATGAACAGCTACAGCTCCGAGGGAAACCTGATCTTCCCTGGTGTGAGACTGTCCTCCGACGCCCAGTTCTCTGACTTCCTGGATGGACTAGGCCCAGCCCAGCTGGTTGGACGGCAGACGCTAGCTACACCACCCATGGGTGACATCCAGATTGGAATCGTGGACAAGAAAGGAGCGCTGGAGGTGGAAGTGATCCGAGCCCGTGGCCTTGTGGGAAAACCAGGTTCCAAGGCACTGCCAGcACCATATGTAAAAGTGTATCTTTTGGAAAACGGAGCCTGCATAGccaaaaagaaaacaaaagtaGCAAGAAAAACCTTGGATCCCCTTTACCAGCAGCAACTGCCTTTCGAAGAGGCTCCTGGAGGGAAAGTTCTACAGATCATCGTATGGGGAGACTACGGACGCATGGACCATAAATCCTTTATGGGAGCAGTTCAGATACTTTTAGATGAGCTGGACCTGTCTAACATGGTGATTGGCTGGTTCAAGCTCTTTCCTCCTTCCTCATTGGTGGACCCTACCCTGGCCCCCTTGACAAGAAAAGCTTCCCAAACGTCATTGGATAGCCGGTCATAGCAGTGTGTGGACTGATAGCATTGTTGTAGCAGCAGCACCCAGTGTTGAGGTTAAACATGCTGCGACAGACAGGTCACGCCCCCCGGTTACACTGCATGCTTGATGTTGTGTCTTCTGAGCCTGTTTCTAGGGGTGCAAATGTGATCCTGTGTTTTGAGAAAAATGTCGCACACATTGTGCGTAGCGAGCGTCGCTCCCTCGGCCGGGTCTGAGCACCAGCTCGGATTAGAAGGCCGTAACGGACTCCTTAGCACCAGGAATTGTCTCTAAATCGAGCGATTCCAGGTTTTCATCCAATCTAAGCCATGGGGGTCAGAACTGGGAACCCGCTCGATGAGTTCTACAGAAGCCCTTTTCGaatgaaaaatacatgtttttgtttataatgatttttttttgttttttgtttgttttattgtcGATGTACTTGTATACCTGAAGGGGTGACTGACAGTGTTGTCCTGTCCAGAAGCTTGGTCACGCCAAGCCAACAGACCTAGCTAGATGTGTAAATGGAACTATGAGGTTCATTGCAATTGGAGAGGTGGGGTGTCCCAACTAAAGCTCAAACTTCGAATATGAGGCCCTAGTCAAAATAGTAGTAGATCACACCAGAGAGACAATACTAAAGTTACTAAAGGCAATACAGAAGTGGCTACTGTACTATCGACACTCCAGAATCTATTGATCAGAACCCACAACAAGACTAACTTTTATGACCTAACATTATTATTTCTCTGTTGATATATTGTATGACATTTAAatgaagatttaaaaaaataaaaaaaaacatttttgcatgGACAAAAATTTAGCTGAAAAAAAAAATGACCATTATTTTCTTGAGGCTGCGACTTGCAAAAAAAGatgaagaaaaacaaataaaacacatCAGCCATTTTCAACAAtttatattatttttaaatataaatttCACTAGTGCATGGTTTTCAAAGGGGAGTGAATGCAACAGCGTGATAAAAAAAGACACATTGTTTATCATTCTTTAGACCATCCATAACATAAGTCTGTGTTTGGCAGACATACAGTAAGAGAAACTAAAATAAAAACTTTTGGAGTTatttaacaacaaaaaaactgtttATGTGACAAAGTGATGATGAAAATAAatgtaaattatttatttcattgcAAAGGTTTACAAGCCTTATAAAGATAAACATTATGTGCAAATTGTAcacgtctctttctctcccttgtcCCAGGGCGTCCCCCTGATATTGTCCAGAGTTTCAGGACTGTTGGTTCTTTTACAGCTCTGTATCGTTTCAATATGTCTTTTTTGGCGATTTGTTTAACAAGCATGTTGAAAAGGATTTTCTGCAACATGGCTTGGGCACACCTTAAAGTAACTCAGCATGTTTTGATAAAGAGGATGTTTGGGAGTTTTGCAGTTTCTTGTACAGTGCATGTCAACTTCGTTACTTCCCCCCCCTCACCTTCAATTGAATTCTACAGAAAATTCATTAGTTACTTTCATGGCCAAACTATTAAAACGTTTTAACAAAACATTCCACTAACCCTTAGATCATATTTTATTTCCATTTTTTCAAAAAGAATGACAaggaaaaatattttatattcgTTGGAGGTTGACAAAAAAAGTTATGGTTGCGAGTGTATTTTATTTCAGTATTGTTAACTAACATGCAAAAATAATCTGTATTGGTACAGCAAGAAAGATATTTATATCCAAGCAAGAAGCGGCAAACATACAacttatgtactgtatattgctgTGTAGTTCAGGCACTGTTTGTGAGGATGAGCAAAACACAAGGTCAAACAACATGGGATATTGCCACACAATAtgaatttagttttttttgtttttgtgaaaatataattaatttcatatatttttattaGTTTATTTATAAGCCAAgaccagtttattttttatttttagtaatTGTAAATGCTTCTTGTGTATGGGAGGTATATGAATCTTACAGTTATGTCTGAATGAAAATAAACTGAGACGTTATTCCTTTTCCATGTTAAACCTATACATTCTAATGTCCATTCAATATCTTGTCGCTATAACAAGCTATATACTTTCGTTTTTGATTTACATTGTACATATTAGAAATTTGAATAAAACAAGCAAACACAAATAGATGACAATATTTTGGAATAGGAATAATGTCTCACATGATGACAAAGACATGTGTTATTTACCCTTTTGAATGCCTTTTCTTTCTTTTGTTTTGGTGCAATGTGTTTATGCCAAGGCTATGTCTTGGTGAAGTATGGTTGAGTACAGAGATTTATGTAAGttatttttcaaataaaaaatggATATTACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266156 lncRNA downstream 7555 19404919 ~ 19408499 (-) False G232802
TU266157 lncRNA downstream 7555 19404919 ~ 19408499 (-) False G232802
TU266158 lncRNA downstream 7555 19404919 ~ 19408499 (-) True G232802
TU266200 lncRNA downstream 27068 19388032 ~ 19388986 (-) True G232835
TU265383 lncRNA downstream 182537 19225570 ~ 19233517 (-) True G232105
TU266340 lncRNA upstream 51601 19633964 ~ 19634713 (-) True G232971
TU266341 lncRNA upstream 52444 19634807 ~ 19635142 (-) True G232972
TU266345 lncRNA upstream 60030 19642393 ~ 19642631 (-) True G232976
TU266347 lncRNA upstream 61417 19643780 ~ 19643991 (-) True G232978
TU266172 lncRNA upstream 69127 19651490 ~ 19652601 (-) True rims2a
XM_036971043.1 mRNA downstream 133686 19065512 ~ 19282368 (-) False LOC110511176
XM_021592216.2 mRNA downstream 391902 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA downstream 391902 18826879 ~ 19024152 (-) True LOC110511207
XM_021592221.2 mRNA downstream 513581 18826879 ~ 18902473 (-) False LOC110511207
XM_021592238.2 mRNA downstream 580724 18826879 ~ 18835330 (-) False LOC110511207
XM_021592817.2 mRNA upstream 72920 19655283 ~ 19667465 (-) True LOC110512409
XM_036971255.1 mRNA upstream 180013 19762376 ~ 19785561 (-) False LOC110512480
XM_036971271.1 mRNA upstream 182141 19764504 ~ 19785552 (-) False LOC110512480
XM_036971265.1 mRNA upstream 182141 19764504 ~ 19785554 (-) True LOC110512480
XM_021592859.2 mRNA upstream 260347 19842710 ~ 19851098 (-) False LOC110512516
TU265301 other downstream 133916 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 814179 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 1285000 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 1285968 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 1438145 17975245 ~ 17977909 (-) False LOC110505118
TU266349 other upstream 65723 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 173841 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 969420 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 1066408 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 1596234 21178597 ~ 21180682 (-) False G234224

Expression Profile