RNA id: XM_036971165.1


Basic Information

Item Value
RNA id XM_036971165.1
length 2751
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110512421
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19667598 ~ 19674027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcaccttcagtttttttttatcctcGATTTTTTTTGTGCTTTGCTTTTTCTATTTTCACAGGCGTCGAAGACGCAAGAGTCCGATAACATTCCTCTCGTGGTTTTATTAGAACGTCTAGTTAACTGTAAACGCCTAGCAAGGAATTGGATTGCACTTGCAGCTCAGAAAAATGCTAACAAAAATTATGGAGGATTCCCATTTTAACTCTCAGTACTTCTGGTCCCCTGTGCCTGTACAAGGACAGATTGAGAATGCCATGTTCCTGAAGCAACTGAAGGACCAGGAGAAGAAcacttccttcccctcctctcattACCAGACAACCATGCTCACTGTCCCCAAGcaggagggaggggggcagggcCAAGGGGGTCACCTACACCCCCCTCACACCCAGAACATCACTGTGGTGCCCGTAGCTTCCACTGGTATCAtgacagcagCGGGTCTGGTCATCACTACCCCTCAAGGTACACAGCTGgtctctcctgcctcctcctctcagtCCTTTGTCTCTGGACATCCCACCATGATCGTCTCTACACTGCAcactccagACAAGAAACAGGAAGGTGGAACCCCCCAGGTGATCGTCATGCCGACACCTTTGAAGCGAGGAAGGAAGAAGAAGTCAACACTAGGGAGGGGGGTGCTTGCTGGTGGCCACACCCTCTCTGCCGGAAATGAGGCGTTGATTCTGGCTCACTTGGCGTCAGGGGGGCAGCATTATACAACTGACCCGTACGACCTCGCCAACGAAGACGAGAACCACGGCGGGAAAGACTGCAACAAGACCTACAGGTGCCGGATGTGTGCTGTGACCTTCTTCAGTAAGTCAGACATGCAGATCCACTCCAAGTCTCACACAGAGGCCAAGCCCCACAAGTGTCCCCACTGCTCCAAGTCATTCGCCAACTCCAGCTACCTGGCCCAGCACATCCGCATCCACAGCGGGGCCAAGCCCTACACCTGCTCCTACTGCCAGAAGTCCTTTAGACAGCTCAGTCACTTACAGCAGCACACACGAAACCACACTGAGTCCAAGCCCCACAAGTGTCCCCACTGCACTAAGTCATTTGCCAACTCCAGCTATCTGGCCCAGCACATCCGCATCCACACAGGGGTGAAACCCTACACCTGCTCTTTCTGTCAGAAGTCCTTCAGACAGCTCAGTCATCTACAGCAGCACAACAGGATCCACACAGGAGACAGGCCTTATAAGTGTGTTCATACGGGCTGTGAGAAATCCTTCACACAACTCTCCAACCTACAGTCCCACAGACGGCAGCACAACAAGGACAAACCCTTCAAGTGCACCAACTGTAACCGTGGTTACACGGACGCAGCCAGTCTGGAAGTCCACCTGTCCACTCACACGGTCAAACACGCCAAGCTCTACTCCTGTGGCCTCTGCAACCGCACATACACCTCTGAGACGTACCTGGTGAAACACATGCAGAAACACAACTCAGACCCGCTCACTGCAGCGGCGGTGGCTGCTGCACAGCACTCTCAGCAGAACCAACAGAACCAAAGCCATACCCAGAACCAGGGAAGTTCTCACGGCCGAGGAGAGGGCACTGATAGTGGGGCAGTCCGAGCCGGAGGACAAGGTGGAGATCATGGACAAGGACAAAACCAGGGCAGCTACTCTCAGACAGAGACGGCATCCTGCCCTTTTGACCTGCACCAGTATAAAACAGTCGCTGCAGGGGACATCCAGTTCAAATCAGTCAGTGTGGCAGACCTAGCGACCCACAAGGACCTCTGTCTCACCGTGGCTACCTCCACCATTCAGGTGGAGCACCTAAACTcataggggtgggagggaggagtggtAGAGACTGAGAGAAACTGGAGGAGCCCTATGGACAGACTGGATAAAAGCAATACAGAGGGGATATAGGAAGATGTGCCTGAAAGGTGGGCAATGGAAGAGGAATAAGAGATGTTCGAACAGAGATGGACTTTTTGTACTTTTTTGTACTTGTTTCTCACTTTTATTTCATTTAGCCAATGTtgagtttgtgtgtttttgtactCTTTTATAATGAATGGCTAGTGTATACTGTTTGTAAAGGAGTGTTTCTCTGTCCGTCACTGCAATGGTGTGGAAGAGAGACACAAAATGACTGAAAGAGAACAATGAGTGAAGAGatgttctctcttttttttttttttatccttctACTCCATACGAACACAACTTTGATTGTGGTCACGTAAACTAACAGAGAATTGTTAAGGTAAATTTTTCTACTTTCCCACAGATACTATCAGGTTTTGATTACATCATCGTTGTCATGGTTACTGTAATTACCTTGTAAAATGTGCTCACAAATCTTTTTCACTGGAAAAAAAAAGGGAAGTAGGctctgtaaaaaacaaaaaaggcCTGCTAAAGTATATATTGATATACATaccagtgtatatgtgtgtgtgcgtgttaaaaataaatgtataatcTATACTATATAACACTTTGATATTTAGCTTCAGTCCAGAAGCCAATCCTGTTTACCTCACCTGACCCTGTAAGAACTGGGAAGGGAATGTGATCAGCTGGTACTTGTTCTATGTATTTCTTGTCATATTTATTTTGTGTCTTAAGAATATCATTGTTATCCAAATATATTGACTATACTTCCACTACTGTTATACTAAAGTGTATGAGCCTTTACAAACAGACTGATACGTATGAAAATAGTGTTTTCCCTTATCAAACAATAAAAACCTCACTGAAATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265636 lncRNA upstream 32839 19634692 ~ 19635057 (+) True G232333
TU265625 lncRNA upstream 61887 19605708 ~ 19606009 (+) True G232322
TU265624 lncRNA upstream 63208 19604263 ~ 19604688 (+) True G232321
TU265621 lncRNA upstream 67517 19600173 ~ 19600379 (+) True G232318
TU265620 lncRNA upstream 68023 19599627 ~ 19599873 (+) True G232317
TU265657 lncRNA downstream 84579 19758606 ~ 19762318 (+) True LOC110503829
TU265673 lncRNA downstream 88693 19762720 ~ 19765169 (+) False G232355
TU265674 lncRNA downstream 88693 19762720 ~ 19765169 (+) True G232355
TU265672 lncRNA downstream 100290 19774317 ~ 19775179 (+) True G232354
TU265734 lncRNA downstream 159015 19833042 ~ 19834477 (+) True G232413
XM_021592813.2 mRNA upstream 259398 19356772 ~ 19408498 (+) False LOC110512399
XM_036971061.1 mRNA upstream 259398 19356773 ~ 19408498 (+) True LOC110512399
XM_021592202.2 mRNA upstream 601693 19044307 ~ 19066203 (+) False LOC110511188
XM_021592207.2 mRNA upstream 601693 19044307 ~ 19066203 (+) True LOC110511188
XM_021592246.2 mRNA upstream 841174 18819001 ~ 18826722 (+) True LOC110511248
XM_036971209.1 mRNA downstream 137 19674164 ~ 19682731 (+) False LOC110512436
XM_021592830.2 mRNA downstream 221 19674248 ~ 19682731 (+) False LOC110512436
XM_036971215.1 mRNA downstream 326 19674353 ~ 19681182 (+) True LOC110512436
XM_036971243.1 mRNA downstream 21096 19695123 ~ 19759470 (+) False LOC110503829
XM_036971231.1 mRNA downstream 24781 19698808 ~ 19759470 (+) False LOC110503829
TU265246 other upstream 433601 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 815914 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1081055 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1371791 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2868964 16794699 ~ 16798932 (+) True LOC100653482
TU265650 other downstream 153103 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 884749 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 934266 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1590048 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1612699 21286726 ~ 21287002 (+) True G234340

Expression Profile