RNA id: XM_036971231.1


Basic Information

Item Value
RNA id XM_036971231.1
length 3177
RNA type mRNA
GC content 0.58
exon number 21
gene id LOC110503829
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19695123 ~ 19762329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGCATTTGGATGCCAAACCTCCATGTCGTCTCAAGAGGATGGTTGTCATTTCATAGTCTGGTTCTATCAGCTTTAGAGAAGAGACGAGAAGAGATTGACATATTATAACCTACAGTATTTAGATCACACTTCAACAATGTATGCCTGTGGTTGTCAGCGCGTCTCCGGACAGGTAACCGGGTGTGTTGCTGGTGCCATGGCAACGCCAGAGCTGCGGCTGTTTCCTGTCATTGTGGTTACCGTCATCCTGGTGGCGTTGTCGGCTGCGGATGACCACGACTGGCACTTTAAACCAGCTCAGTGTCGTTATGCCCTGGGAATGGAGGATGGCACCATCCCTGACTCTGACATCACGGCTTCCAGCGCCTGGTCAGACTCTACTGAGGCCAAACACGGCAGgttgagtaaaggagagggggatggtgcgTGGTGTCCTGCAGGAGCAGTGTTCCCCAGTGCTTCAGAGTACCTCCAGGTGGACCTGCGCTCACTGCACTTCCTGGCTCTGGTGGGTACCCAGGGTCGCCATGCCGACGGGCACGGCCGGGAGTTTGCACGCAGCTACCGGCTCCGTTACTCCCGAGACGGACGCACCTGGATCACCTGGAAGGACCGCTGGGGGCAGGAGgTGGTGTCTGGGAATGAGAACACCTATGATGTGGTTCTGAAGGACCTGGGTCCACCTATTGTTGCCCGCTATGTCCGCTTCTACCCCCTGGCAGACCGGGTCATGAGCGTCTGTCTACGAGTTGAGCTCTATGGCTGTCTGTGGAACGatggCCTGTTGATGTACACAGCTCCAGTGGGTCATGTGATGCACCTGTCTGGCTCACCTGTGTACCTCAACGATTCCACCTACGATGGCAGCATAGAGTCAGGGGTTCAGTTCGGAGGCCTGGGCCAGCTGTTTGACGGTGTGTTAGGAGGGAATGACTTCACAGAGACCAAGGAGCTGAGGGTGTGGCCGGGGTATgactacctgggctggagcagagaGGCTCTCGGGCAGGGCAGCGTTGACATCGAGTTCCACTTCGAAAAGACACGCAGCTTTCACACCATGCAGGTCCACAGTAATAACCACCACACCCAGGGTGTGAGGGTCTTCAGTAAGGTAGAGTGTCAGTTTAAACCTGGCCTCTTACTCCCCTGGTCCTCGCCCCCCCTCTCCCTGGCTGTACCTCTAGAGGACCTGAAGGACCCCTCCTCCCGCCCCATCTCCCTGCCCCTGGGGGGTCGCCCCGCCCAGATCTTACGCTGCCAGTTTGCCTTCGCAGACCGATGGATGCTCATCTCTGAGATCTCCTTCTTCTCCGagccGTATGGGGAGGGTGCCGACCCCATGGACACAGGCTCTGCTCTTCCTGCTCCTCCGGTCTCCTCcgctactcctcctcctcctgtcttcccctcctccgtcaGCCCCGCCCTCAACCACAACTTCACTAGCGTTCCCTCAGAACCCCCCACCACCAACCCTATGATGGACAGCACGGGTAACAGCACACtgtcagGGGCCGACTTCGATGCCATGACCCCGAGGGCAGGCCTTCCTGTCGCCAAGGACGACAGCAGTAACACAGCCATCCTGATTGGCTGCCTGGTGGGCATCATCCTGCTGCTATTAGCTGTGATCGCTGTCATTCTGTGGAGGCAATACTGGAAGAAGATACTGGGCAAGGCCCAGGGCAGTCTGTCCAGTGATGAGTTGCGTGTCCATCTGTCGGTCCCCTCGGACAACGTGGtgatcaacaacacacacagctaCTCCAGCCGCTACCAGCGTATACACACATTCCCTGACGACAGGGATAGGGAGCGCTGTGACGGAGAGGGCGAGTACCAGGAGCCCAGCGCAATGCTCCGACCACGAGACCACACCGGACGAGACAGCAACGatcagaggcagcatgACTCAGGCTCCTCGTGGCCCCTAACCGTCCCTTTGGCCAGGGCCAGCTCCTCCCACCCTCAGGAGAAGAGCCTCAATAATGGGGCCCAGGcctgtGGTATGGACTTGGAGAAGGGCTTGCCCCCCACCCAGGAGGAGCCTCCCCCGTACCCCGATGCCCCTCCCTACCCGGCCCTGTCTCCCCCCTTCCCCGCCAGCGTGCCCCACTATGCAGAGGCAGACATCGTTAGCCTGCAGGGCGTCAGTGGTAACAACACGTATGCAGTGCCAGCCCTGACCTCCCCCAGCCCCACTGCAGCAGACTGCACCCCCCTGCCTGAACTGCCCCGACACTGTCTGGTTTTCAAGGAGAAACTGGGAGAAggacagtttggagagGTGCACCTGTGTGAGATAGAGAGCCCTCAGGACCTGCCTAACCTGGAGTTCCCTTTCAACGTGAGGAAAGGACGCCCTCTGCTGGTGGCTGTTAAGATACTGCGCCCTGACGCCTCCAAGAATGCCAGGAATGACTTCCTAAAGGAGGGGAAGATTCTGTCTCGTTTGAAGGACCCCAACATCATCAGTCtgttgggagtgtgtgtgagcaGCGACCCTCTCTGTATGGTCACAGAGTACATGGAGAGTGGCGACCTCAACCAGTACCTCTCACACAGAGTCCTGCTGGACAAGACTGGACCCACacacaacacccccaccatcagTTACCCTGCTCTGATCGCCATGGCCAGTCAGATAGCTTCAGGGATGAAGTTTCTGTCGTCTCTGAACTTCGTGCACCGTGACCTGGCCACAAGAAACTGCCTGGTGGGGGGTGAGAAGGGCGAGAGCGGGGGCGACCGGGGCGGGGAGAGACCCATCAAGATCGCCGACTTTGGGATGAGCAGAAACCTGTACGCTGGAGACTACTACCGCATCCAGGGGCGAGCCGTGCTGCCTATACGATGGATGGCCTGGGAGTGTATACTGATGGGGAAGTTCACCACAGCCAGTGACGTGTGGGCGTTTGGTGTGACTCTGTGGGAGATGCTGAGTGTGTGTCAGGAGCAACCCTACTCCAACCTGACTGATGAACAGGTCATAGACAACGCCGGAGAGTTCTTCAGGGACCACGgaagacagGTGTATCTGAGCAGGCCAGATGTGTGTCCTCAGGGTCTCTATGACCTCATGCTGAGCTGCTGGAACCGGGACTGCAAGCTCCGCCCATCATTTGCCCACATTCACTCCTTCCTCACAGAGGATGCCATGAACATGgtgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265636 lncRNA upstream 63751 19634692 ~ 19635057 (+) True G232333
TU265625 lncRNA upstream 92799 19605708 ~ 19606009 (+) True G232322
TU265624 lncRNA upstream 94120 19604263 ~ 19604688 (+) True G232321
TU265621 lncRNA upstream 98429 19600173 ~ 19600379 (+) True G232318
TU265620 lncRNA upstream 98935 19599627 ~ 19599873 (+) True G232317
TU265673 lncRNA downstream 3250 19762720 ~ 19765169 (+) False G232355
TU265674 lncRNA downstream 3250 19762720 ~ 19765169 (+) True G232355
TU265672 lncRNA downstream 14847 19774317 ~ 19775179 (+) True G232354
TU265734 lncRNA downstream 73572 19833042 ~ 19834477 (+) True G232413
TU265735 lncRNA downstream 91490 19850960 ~ 19851271 (+) True G232414
XM_036971209.1 mRNA upstream 16077 19674164 ~ 19682731 (+) False LOC110512436
XM_021592830.2 mRNA upstream 16077 19674248 ~ 19682731 (+) False LOC110512436
XM_036971215.1 mRNA upstream 17626 19674353 ~ 19681182 (+) True LOC110512436
XM_036971165.1 mRNA upstream 24781 19667896 ~ 19674027 (+) False LOC110512421
XM_036964138.1 mRNA downstream 41769 19801239 ~ 19801909 (+) True LOC110503837
XM_036971287.1 mRNA downstream 43516 19802986 ~ 19819461 (+) False LOC110512494
XM_036971312.1 mRNA downstream 43516 19802986 ~ 19819461 (+) False LOC110512494
XM_036971304.1 mRNA downstream 43587 19803057 ~ 19819461 (+) False LOC110512494
XM_036971297.1 mRNA downstream 43660 19803130 ~ 19819461 (+) True LOC110512494
TU265246 other upstream 464513 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 846826 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1111967 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1402703 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2899876 16794699 ~ 16798932 (+) True LOC100653482
TU265650 other downstream 67660 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 799306 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 848823 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1504605 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1527256 21286726 ~ 21287002 (+) True G234340

Expression Profile