RNA id: TU265657


Basic Information

Item Value
RNA id TU265657
length 3455
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110503829
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19695123 ~ 19762329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggcgagCCGTGCTGCCTATACGATGGATGGCCTGGGAGTGTATACTGATGGTGagaggacacacagggagagagaggggcgaggaaggagagagaggggcgagccgTGCTGCCTATACGATGGATGGCCTGGGAGTGTATACTGATGGTGagaggacacacagggagagagaggggcgaggaaggagagagaggcataaagaaaACAAGAGGGAAGATATGAGGACATTACAAAAGAAAGAAACAAAATGGTGGGACAAGTAGTAAGTTAGTTGTGGTAAATAAGTAACTAACAGATAGTTTGTGTCTCTGCAGGGGAAGTTCACCACAGCCAGTGACGTGTGGGCGTTTGGTGTGACTCTGTGGGAGATGCTGAGTGTGTGTCAGGAGCAACCCTACTCCAACCTGACTGATGAACAGGTCATAGACAACGCCGGAGAGTTCTTCAGGGACCACGgaagacagGTGTATCTGAGCAGGCCAGATGTGTGTCCTCAGGGTCTCTATGACCTCATGCTGAGCTGCTGGAACCGGGACTGCAAGCTCCGCCCATCATTTGCCCACATTCACTCCTTCCTCACAGAGGATGCCATGAACATGgtgtagagtgagagaggaatggaagagtgagatggagagagagggattagagACGGCTACCCCtacctccattcctccattcatCATAGAGATGAGTGCTTTGAGCGAGGGATGTGTGTAGAAGTGGTGGAGGTGTAGAGGGAGAGGTGTGCAGTAGAGGGACGGGTGCCTGCTTGTATATTTTGTATTTCTCTATGATGGGCGGATGGGGCTGAGACACCGCTGGTTCGGTTTTCACTCCCACAAGACAGACCCCAACCCAAACCCATTTCACCCCCCTGAGTAGTCTCTAGATTGTCTTGATAAgaatgtaacacaacacaatggttGGTGCGGTGGTGGGTTGGTGTCTGATTCTGCATAGTGCTTCCAGGACCACCGATGGTCGGTCAATGGTCTGCTAGTGAACACAGGGAAGCTGTTAGACGTATGGGGAGGCGATGTGACAATGCTTGGTAATGTAGATGAAGCTAAAATGAATGTGTAACGCTGATTAACGTTTATCAAAGAATATAAACAATACCAATCTGATTATGTATCAATGTCAGACTTTAATACTCTGACACTCATAGTTTAATAGCATATTAACATTTTGGGATAAACTTAACACATCATCCTATATAGATATTTTATTACTTGACCTGCTAATGTTTTTGGTATTGTATAAATCATGTGCTAGGGTTACTGGTGAAGGTCTATATATATTCTCATACTGTCAACATTTCTCCATCTCAAAACGGTACGCACACATTTTTCACACAGAGATGAAATTGCACACAAGGTTTGCTGTCTTAGTAGTATATATAAAACGAGTATGTCCCAGTAAAGTCCATTATGTTTCACTAGTTATCAGTATATAACCCAGTTCTTCCCAGACCCTTATTCCCAGCTCCAAACCCTCCATCCCAGACCCCAGTCTAAGGTTGTCTCTAGTCTCATGGAACCAGACGAGTGTGGCTGAATATTGCATTATATTCCTCTGGCCTACCCGTTAAAGTCTGGCAAGCAGAATGATGGTATCTCATACACAGGCCAGTAGCAGACACAGCAACAGCTGTTCCACCAGCAGTCTGTAACACCAggcattagacacacacacacaatgctgtcagtcagtcagctgctcAGCCCAGACTTGGCTGGCATTGTGACTATAGTCTTCCACATTCTGCTTCCCACTCCACCCAACTCAGTATCTCACCAATCCAGAAGCCTTTCATTCTGCAGTCTCACTCATATCTCTCACAACTGATCCACTCTGAGCTGTAACTATGGAGTTATAGAGGGCTGGTGTGAACTGATCTGGACTCGAGGACTCTTTCCAGGACAGGAAGTGTGTGGTTGTTACCATAGAGATATGGTTGTTACTCTACCAGACTAGAACCCTTTGGACTTCCGGAGCCAGAGAGAACTGACTGGTGTCATGTGACATGAGCCTCACTGACTgagagaacaggtacagtaggggAGGTGCACTGTGAACGGCTACAGACTATGAGATTTGAACTTAACAGAAGAGAGACTTCCTTCCTGATGAGAGCTGGAATAGTACAGcccacagcaacacacacagcaCTGCCTGTGGTGACATCACATGTGAAACTGACAGTTGTGATTGGTGACTAGCTGATGGAACAGCATAACATGGATGGACAGATGGATTGACAACTAGAGGGGAGTGGGGGCTGATATATGTAAATGACCATTTTCATGTGTAAGTGAGGTGAGCGATGTGATTTTCTACCAGCGATGGATAGCGGAGCTGGGTCTGACTCAGTGACCCAGATGCAGAAAGGGGGGTTCATGTATATGTCCAATACACTACCAGCTGCACTTTAAAGGCCGTTTCTGGCCGCTCGCCCCAACACCTGCACTACAATACTAGAGTCGTGGTCAGTCTTGGGGCGTAGTTACAGTACTTGTAGTTGAACAACTAATTAACAACACTTTCAGAGTAGCTCCCACAACACTGGTATGTATCATGTTACTATACGAGTATCAGGTTAGTATGCTAGTCTGGATGTTGGAGCGTACAGACAGTCTGTATCCCCTTGGTGTTAGTACTGATAGCAGTCCAACATGGCGTTGCTGGTCAAAATAGATGTAGTTCTAAACATAAAAACAAGTCAGTGTCTTGTGATTTATCTACTTAAAGATGATCATGTATTCATGATTCATTTCAGTGGATTGTTGTTCAAATAGAACTGCCTCATAAAAGTTGTCAAGGAGGAAAATTCAGCTTTGGAAAACCTCTGTCTGCATTATGAGGAAAGGCAGAGTACACCAAATGCTTTCTGCCAGTGTTACATAGATACCCAGCAGACCTAATGGTTAAAACATCCCAATCACAAAGAACCTAACACTCATGAGAAGAGGAGCAGTAACAACTGTATCCAAAGCCTTTTAGTTTGTCAGTAACCTTTCATCTACATTACTCTGCCTTACTGACTGTAGTTCTGCATAATGTGTCAGGCTTAATCAAGATGATCAAATAATCCTTGTTTACTGATTGAATGCGTGTGAATGGTGGTGCTATATGAATACAGTATGTGTCTCGATTGACCTTTTTCGATATACAAATATGGGTTTAGTTGGGCTAGTGTATATATTTCCTGTATACTACTTAGAATCTCCTTGTTGTCAGTGATGTCATCCTTTGTCTTTGAAGCTGAACCTGATGTGTACATATTTTAAGGACAGAATTGTTATTTTGTTGACTAATATATGGAATTTCTTTGTTACAGTTGGGGTCTCTTCTTTTTGTTCCTCTGTAGAAAGCTTGCTACCTTACCTTGGTGCCATTGTAATTCATTGTGTCGTCTATTTTTGTAGTTTTAATAAAGTTAATCTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265636 lncRNA upstream 123549 19634692 ~ 19635057 (+) True G232333
TU265625 lncRNA upstream 152597 19605708 ~ 19606009 (+) True G232322
TU265624 lncRNA upstream 153918 19604263 ~ 19604688 (+) True G232321
TU265621 lncRNA upstream 158227 19600173 ~ 19600379 (+) True G232318
TU265620 lncRNA upstream 158733 19599627 ~ 19599873 (+) True G232317
TU265673 lncRNA downstream 402 19762720 ~ 19765169 (+) False G232355
TU265674 lncRNA downstream 402 19762720 ~ 19765169 (+) True G232355
TU265672 lncRNA downstream 11999 19774317 ~ 19775179 (+) True G232354
TU265734 lncRNA downstream 70724 19833042 ~ 19834477 (+) True G232413
TU265735 lncRNA downstream 88642 19850960 ~ 19851271 (+) True G232414
XM_036971209.1 mRNA upstream 75875 19674164 ~ 19682731 (+) False LOC110512436
XM_021592830.2 mRNA upstream 75875 19674248 ~ 19682731 (+) False LOC110512436
XM_036971215.1 mRNA upstream 77424 19674353 ~ 19681182 (+) True LOC110512436
XM_036971156.1 mRNA upstream 84579 19667598 ~ 19674027 (+) False LOC110512421
XM_036971169.1 mRNA upstream 84579 19667598 ~ 19674027 (+) False LOC110512421
XM_036964138.1 mRNA downstream 38921 19801239 ~ 19801909 (+) True LOC110503837
XM_036971287.1 mRNA downstream 40668 19802986 ~ 19819461 (+) False LOC110512494
XM_036971312.1 mRNA downstream 40668 19802986 ~ 19819461 (+) False LOC110512494
XM_036971304.1 mRNA downstream 40739 19803057 ~ 19819461 (+) False LOC110512494
XM_036971297.1 mRNA downstream 40812 19803130 ~ 19819461 (+) True LOC110512494
TU265246 other upstream 524311 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 906624 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1171765 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1462501 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2959674 16794699 ~ 16798932 (+) True LOC100653482
TU265650 other downstream 64812 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 796458 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 845975 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1501757 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1524408 21286726 ~ 21287002 (+) True G234340

Expression Profile