RNA id: XM_036971255.1


Basic Information

Item Value
RNA id XM_036971255.1
length 4237
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110512480
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19762376 ~ 19785561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCGTGGTCAGCATTTGCACTCCATTAAGTCCGTTAAGTAACATTTTGTTGCAATTCCAGTATTTGAGCCAGTCGTCAATTCACGTAAATCGGAGTATATTGAAACCATCTGGAGTGTACACGACGATTTAGGGAAACATATCTTTAGGGAGAATCGATTGCTCTTAGGTCCAAATCAAGATGTTCTACACATGTGGACCCAATGAAGCCATGGTGGTGTCTGGCTTTGGTCGTTCCCCTCCTCTAATGATCGCTGGAGGTAGAGTGTTTGTCCTCCCCTGTATTCAACAGATCCAGAGGATCACTCTGAACACCCTGACTCTGAATGTGAAGAGTGATAAGGTGTACACCCGTCATGGAGTGCCCATCTCTGTCACTGGCATCGCCCAAGTGAAGATCCAGGGTCAGAACAAGGAGATGCTGGCCACGGCCTGTCAGATGTTCATGGGGAAGTCTGAGGCTGAGGTCTCCAACATCGCCCTGGAAACACTGGAGGGGCACCAGAGGGCCATCATCGCCCATCTGACTGTTGAGGAGATCTACCAGGACCGTAAGAAGTTTTCTGAGCAGGTGTTCAAGGTGGCCTCCTCTGACCTGGTCAACATGGGCATCGGCGTGGTCAGCTACACGCTCAAAGACGTTCACGACGACCAGGACTACCTCACCTCCCTGGGTAAAGCTAGGACAGCTCAGGTGCAGAAGGATGCCAGGATCGGAGAGGCTCAGTACAAACGAGACGCGGTGATCCGTGAGGCCCAGGCCATGCAGGAGAAGGTGTCGGCCCAGTATCTGAATGAGATCGAGATGGCCAAAGCCCAGAGAGACTACGAGCTGAAGAAGGCTTCCTACGACTATGAGGTCAACACCAAGAAGGCAGAGTCTGAGATGGCATATCAGCTGCAGGTGGCGAAGACGAAGCAGCGGATTGAGGAGGAGACGATGCAGGTGAAGGTGGTGGAGAGGTCTCAGCAGATCATGCTGCAGGAGCAGGAGATCACCCGCAAGGAGATGGAGCTGGAGGCCACGGTGAAGAAGCCTGCTGAGGCCGAGAGATACCGTCTGGAGAGACTGGCTGAGGCAGAACGtgCACAGCTCATCATGGAGGCTGAGGCAGAGGCAGAGTCCATCAGAATGAGGGGCGATGCTGAGGCGTTTGCTCTGGAGGCTAAAGGTCGTGCCGAGGCAGAGCAGATGGCTAAGAAGGCTGAGGCTTTTAAACAGTACGGGGAGGGGGCCATGGTGGACATGCTGCTGGAGAAACTACCACTGATAGCAGAGGAGATCAGCAGGCCCCTCTCCATGGCCCAGAAGGTTACCATGGTTTCCAGCGGCGGGGGTGAGGTGGGCGCGGCCAAGCTGACCGGAGAGGTTCTGGACATCATGACCAGACTACCAGCTGCCGTGGAGAAACTCACTGGAATCAACAtctcacagGTTGGGCTGTCCACCCGAATGGGCTGAGAATGGAGCCTAGTTATTGAGACAGCCTGCACCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTagttgtctgtctgcatgtctgtctgcatgtctgtctgcatGCCTGTCTCCTTAGTtcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatgcctgtctccttagggcatgtctgtctgcatGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCCCGCCAGACCAGGAACTCCATACTGCCTCCTTGTGCCTATAATTATTATTACCTAGTGTAGTTGTCTGTCTGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGCCTGTCTCCTTAGGGCATGTCTCAACACTCTTATTCGACCTCCCCTCTTGCTTCCTGGTCCTTGTTGGCACTGATCTGAAAACAGAGGATGGTTCCAAGCTGTATGTTGTAAGCCTACTGGGGGAGTGTGTGTCCTGGTCATTCATAACTGGTTAGTTCAGCTTGGATGAAGGAAAGAAAAGCACTTTGGACTAGCATGACACGGCCTTCGTCGTTCTGGTAGTAACTCCGCCTCCTCCACCATTCTGTACTCTTCTCTCCGTCCGCTattcagtgtgttttaatcacTGCTTCAAGCctgcctctgtctccctccattacAGGTTTGGGTCCATATAAACTGTTCAACTGTCACATAGTTGTAATTCCTAGAATGTTATTTCATTGGGATGTGGTTGTGTTTGAGAAATGATGTAGGAAATAATCGTGTCAGTATGAGGTCATCCATGTTATTGTTGGGTTTGTCAGCTGATTGTTTTGTCAACATTTGCagttctagaaggttctcagCATCGGAAGCTTGCTTAGTTGCTATCAATTGCTTTGAAAATGAAGAAATGCTTTTTACTTTCACTGGGAAGAAATGAAGAAATGTCCACAATCAGAATTTAGATAATGGTAgtcatttttatacatgacttCTGCATGCCGTACAGCATTCCAGTACCTCTGTCTACCACCGTATGGACAAAGTGGTTTTCCACTATGTGCTCCCCTGACAGTAGACTCTAGATCAGTCTATCTACTCATATCTCTAAGATGACACTCTAGAATGGCCAGTGCCTTGTTTTAGAGTCTAATTAATCATATCACTACAAGCCATATTACAATAGAAGCCAAGTTACATGCAGATTATGCTGTTTTTTGTAAGTCTGTTTTATGATTTGTGGGCTTTTTGCCATGACTCTGCCATTTGTGGGGGATGACATCACGAACTATATGATGGGTTGGCACTAAACCTCTTCTGTGTTGGTACAATACTGGCATAGACACAATCAATGGAGTACCGACTGATGGTACCTAATCTAATTACCAAAGCAATAAACAAGGAACTACAGATTCTGTTACTATACTGTTGTTTATCCAACAGACAGATTGTCATGTACACCATTATGGCTTAGTTCCAGTGTGTTTCTAAACCCTAGACTTATTAGACAGACAGGCCTTCGATCAGAGCTTCTACTGTGCTACAACTGTATAAAGGTGGAGATATTCTGTGAAGTGATtggaaggaagagggagggagcagaCTGGGGATTTCCTGCTGAAGGCTAACCTCAGAGGTCTCTCTAGGTCAGGTGTACTGTCAGTCACGTGGTGTCTGGTGTTGTTTGAGGTGAAGGTATGTGTGTAGAAGAGGGGaatgggtgccagtctgtttctgctctcttttCAAATCCTTATAGAATTGCCATGCCAAACATGTTTCCCTTGACAATGACAATGGAACAGGCAAAAACACTAAAGTAGTGGACTTCCATTAAGTTGTATGGTCCAGTGGGGTATACAGGAACCTTCTATAGATTGGAGTAGACAATATACATTTGAATTAGGAGCTATCCTTTCATATCGTAATATTATCATTAGAATGGGGTATTTTTGTCGTGCTGGTTTGATCCTTTTGTAGTACAGGGTTGTTGTAGTTGTTAGGGACTTGTTCtataccatagaaatagaatccttCTAATTCTATACCGCTGCTCAGGATTCTAGAAGCTACTTCTCTCTACCGGATTGAATACTACCCCAAAGCTTACATGCGATCTGGCTGTCTATGCATTTTGTTACCAAGTGCCTGACTAAGTTGAAAGATTCCCATTTTTCTCTCAACCTAAAGGCTAAACTATCACACCAGGTTAAACATGAACAATCTAGAGGCATGCTATGTCCTAAAGATATTAATGAAAGCCAATTTCGTCAAACAAATTCTACTGCTTTCACTTATGCACACACCTGTATATTACATCAGTCAATGATTTGTGACTTCTAGCCTTTTTCTGTACTGTAGCTGCACTTAGTtaaatgtgatttctgtgttTATTTCCATCTATACTTTGTTGACTTGCCAAAATAATCCTGGCCTCCCGTGTAGTGTAAATTTAGTATGCAAGTGCACTAAGTTATAAATATTTGGAATGAAATTATTGTAACAACATATAAACACAAACTCTGATTTCCTAACGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266427 lncRNA downstream 4468 19756204 ~ 19757908 (-) False G233052
TU266370 lncRNA downstream 22152 19736084 ~ 19740224 (-) True G232999
TU266372 lncRNA downstream 86602 19674396 ~ 19675774 (-) True G233001
TU266172 lncRNA downstream 109775 19651490 ~ 19652601 (-) True rims2a
TU266347 lncRNA downstream 118385 19643780 ~ 19643991 (-) True G232978
TU266463 lncRNA upstream 26202 19811763 ~ 19813710 (-) True G233080
TU266465 lncRNA upstream 32732 19818293 ~ 19821202 (-) True G233082
TU266441 lncRNA upstream 41781 19827342 ~ 19844650 (-) False LOC110512516
TU266442 lncRNA upstream 53582 19839143 ~ 19844650 (-) True LOC110512516
TU266473 lncRNA upstream 66671 19852232 ~ 19852446 (-) True G233090
XM_021592817.2 mRNA downstream 94911 19655283 ~ 19667465 (-) True LOC110512409
XM_036971069.1 mRNA downstream 109810 19416054 ~ 19652566 (-) False rims2a
XM_036971142.1 mRNA downstream 109812 19416054 ~ 19652564 (-) False rims2a
XM_036971075.1 mRNA downstream 109813 19416054 ~ 19652563 (-) False rims2a
XM_036971086.1 mRNA downstream 180008 19416054 ~ 19582368 (-) False rims2a
XM_021592859.2 mRNA upstream 57149 19842710 ~ 19851098 (-) False LOC110512516
XM_021592867.2 mRNA upstream 57149 19842710 ~ 19851099 (-) False LOC110512516
XM_021592868.2 mRNA upstream 57149 19842710 ~ 19851104 (-) False LOC110512516
XM_021592863.2 mRNA upstream 57149 19842710 ~ 19851108 (-) False LOC110512516
XM_021592895.2 mRNA upstream 91936 19877497 ~ 19895676 (-) False LOC110512609
TU266428 other downstream 5758 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 113747 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 163275 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 480238 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 1160501 18599730 ~ 18601875 (-) True G231652
TU266934 other upstream 766222 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 863210 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 1393036 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 1393036 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 1659927 21445488 ~ 21455716 (-) True LOC110513321

Expression Profile