RNA id: XM_036971320.1


Basic Information

Item Value
RNA id XM_036971320.1
length 6729
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110512505
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19821356 ~ 19844652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatgagattcttcaaataaatTCGCCACCTGGTGCGTGACGGGTTAAATTCTGCAGTTTTTGGTGAAATGCTCGTGAGGGTGTCTGTTGGCTTTCCTGCATATTGAGATGTTAGGTTAATAGCCGATTATTATCCGATAAGGGCTTTATTGGATGAAAACAGGGCGTGCTTGTTCCGGAGAAGATGAAAGAGCCAGGAGATCTGATGAAGATGAAGACAGTCAGTGTGGCAGTGGTGCTGAGCTTGCTGCTCTGCTCAGCTCTGTCGGCCCCTTTGAAAGGTAAAGAAGACTCCCAGAAGACCATGTTCTTTGGGGAGGACTTCCATCTGCAGCTGCCCTCCCTGGCTGCAGaggttttgttccagcccagtagTGCCAAGGCGGGGGTTGAGGTGGTCCTGATGCGGGGTGGATCCGTGGTCGGTAACCGTGCCAAGCTCAACAGTCAGCTCAGTCACCTGATCCTAGCGAACGTGGGCGAGGGGGACGAGGGGACGTACTCGGTGAAGAACAACGAACAGCCGGAAGAGGTCCGACGCATCACACTCATCGTCAGAGACTGTTCCAATGAGCAGAACATTAAGTATGGGGAGAACTACCACATCCAGCTGGCAGGGGTGGAGGCTCCCATCACCCTGGAGTATAGGCCCAGTTCTGTGGAGGCCAACCTGACTTCCAGGCCGCCCCTGGTGCTGATGACCCGAGGAGGGCTCTTCAGAGACGGGTACCAGGGGCGCCTGAGTGTCAACGAGCGCCGGGTCACCCTCAACGCCGTGACAGGCGCCGATGAGGGAAGCTACACCGTCAGAGACACGAACCTGAAGATCATGAGGAAGGTCTGCCTAAATGTCAAAGaACACCAGAACTTTGTGAAGCTGCCGTACGCTGGCACCCTGAAGATCAACCTGATTCTGAATGCCTCCATGGTGCGTCTGTTCTACACGCCCGACTACGACTTCAAAACCAGACAGATCCTGGACGGGGGACAGTTAACGGTGCCAGCAGACCTGGATCTGGTGGGGCGGATCTCTCTGGATCCGTCTGTGGTCATCCTGGACCAGGTCAAGGCCAGCGACGTCGGACAGTTCAAGGTCACGGACATACTGGGGTTTCCTGTGTCCAACGTCTACCTGGAagtggaggcctaCAAGCTGCCGTCCCTCTATGTGGCAATCATTGCACTGGTGGGCTTCCTGGTTCTCCTGCTGTTGGTGTGTCTGCTGTCCTGCCTGGTCAAGCAGAAGAAGAGGGCTGCCAAGGCCCGAGCCATCGAGAAGATTGCCCAAAACGCAGGCAAGGAGGACGAGGGAGATGCCTTCAGACAGGTGGTGAAGAACATTACTCAGTTTGAGGAGTCTATAGCCCAGTCCATCGACATCACAGAGAAGTCTCAGAGCACTGAGGTGGACATTAAAGGTCTGGAGGTGTCGTCCAAGGAGGTGGCAGGTGGTAACCTGGAGACTAGCGACTCAGGGGTGGAGTTTAACACCACTGGCCTCCCATTGGACACTGACACTGACGTCCCCGACCAGATTCCAGAATCAGAGGCTGAGACTGAGAGTGTTGCCTTCGTCCCAGAAACCAAGCCAAGCCCACCCCCGGTTACCAAACCTAGCCAGGTTCCCGAGATCAGAAAAATTCCTGAACCAGCTCCTGAACCAAAGTTGACCATAACCAAACCCGTTGAGACCAAACTCAGCCCAATCCCAAGCCCGGTCTCCAAGCAGGCTCCAAGCCCCATTGCCAAAACACCTGATCAAGCCAAAACTCCTGAATTGAAAACTCCTGATTTCAAAACTCCTGATCCGAAAATACCTGAATTGAAAACACCTGAACCAACCAAAACTCCCGATTTTAAAACTCCTGAACCGAAAATACCTGAATTGAAAACACCTGAACTAGCCAAAACGCCTATTGCTGTGTCTCCAAGCCCGGTGTCCTCTAAGCCAACCCCACCCCTGACCCCTGTCTCCAAACTAACTGCACCCCAACCATCAACCCCTGAACCCCCCAAGCTGGTGACACCAACCCCAGAATCCCCCAAGCCTGTGACACCAATCCAGACTCCGACCCCAACCCCAATGCTGAGCCCTGAACCTGCTCCGACCACCAATGGCACACCCGAACCACCAGCACCTGAATCCAAACCTGACACTGCTCCGGCCCCAGTGGGTCTGATCGAAAGCCCTGTCGCCAAGgcaacccctcctaaaacccctgAAGTGGAGGTGACCGCCCCAAGTAGTCCAGCCCTTGAGGCCAAAATGGACGCCCCAGCTGAGGACAACACCGCCACCACCGCAACCTGAGAACAGTCCCTGCACTCCTCCAAGGGAAACCCCACAGACCCATTATCTTTTCCTTCTCCACCACTGTAGACAGACAATCGAACACCCCCCTTACCAAATAAGGAAGAAATCTCTGCTACTATCGAGGCTGGGACTTCGATTTAACACTTCTAACCCTCGAACATGCTGTAGGTTGTTATGATAGCTAACTCACCTGTACCTAACACTAACATTATCTTTGAGATACTTTTTTCAATTCACAGATACTTTTCACAAGATAGGAAATATAAGCAAGCAAGTTCAATTTGTCAGACGTTTTAGCTGTTGTTGTTTCTTTTTGAACTTTCTATGCTGCATACTCTTTTTTAGTGTGTAAACTAGAGCATGACTGCCGGTCTGCCAACAAAATCAGTTGCAGAGTTTACAAGTAAAATGTTAAACCTAGCTTCTTTAGATATATATATTTGACGTTCAGAGGTGTGCAGAATGGTTCCACAACCTTTTACATAGATATAGGAACAAATAAATGGCAAGTGAACATTACTCAATCTAGTTCAACTACATCTATGACCACCTACTCCATTTGTGGAATGATACAACCTTTGATGATGCCTGCTCTAATCTCAGCATGTGGAAAAACAGACCAAAACGAAAGCACGAACAGCTCGTAAATTTGCAACTGACATTTTTTATCTCATATGATGAAACCAATGACATGATTTAGCCCCCCCAAGGACTTATAAATGTGACTATGACATAACGTTCTCGTCAAACTGGATGAATTTAAATCACCTTTCTATCAAACTGGACTGGATTCCTTCTCCTTGTGACATTCTCTAGTAGTTTTCCTGAAACCTGGGAATCCGGGAATCTGGAAATTTTCCTGCTGGTCCTCTGCCGTCCTATAGAAACATCTAGAATGCTTGAATGATAAAACATCCTGATACAAAGGATCCCCAGCAACACTAACACCTGAATGCTAAACTCTAACATCAATTCCTTCTGCTAAACTAAGTCTAACTTTTGTTTAAAATGGATGTCTCATGTGATTGCGCTCCCAACTACGTGAGAGACTGTATTGGTTATAAGGTGTTGGCCAACTCTGACTGACTGTCCCAGTGGATCTCTAGAATCAGTTTAATCCAAGAGAAAGAGCTTGTTTTGATCCTTGACCTCACCCCAGCACCTGAAGACCCCAAGGACACACCTCAGCACTTTAAGCAATCCCCAGTGAATCTTGGGAAATGTAGTGCTGATTGTTATTGTGCTGACTACAACtatgagagtgggagagggagaggaggaggggtctgGTGAGTGATGTCATTGGCTTAGTCCTAACATTTAAAAAAGGAAACCTCCCTTCTCTATGTCCTTCTTTACTTCTGTCCTTCCTTCTGTCCTTCCTTCTGTCCTTCCTTCTGTACTCCCTCTTTTCCTTCCTCTCTTGCTTGCAGCAGGTGGTGAAGTACAGTATTATGGCATGGTTTCATCTGGCCGATAGATGTAGTTTTACTGTTGGTCCTGCCCTCTTGACTTCTCATTTATAGCTTATGGGTCAGCCTTTATACCCCATGATGACTTATAAAAGTACAGTATGGAAGTATAGTCTTCCCTGAGATAATAGAACAGACCCATGTCAGACTATTCCTTGCCTACACACATCTAAATGCATTACAGTCGTCTATGAACTACATACTGGAAGCCTTGAGCCAACTGTGTGTTCCACGGCTCTGATGCCTAGTATGGTGATctcacagtacagtagacatgcAGTTCTGATTATTTGCTCCAGCCTAAAACAGACACTTCACAAATTAACCCACTAGCATCCATCCACAGCACTGGATAAGATGTCAAATCATGGGTTGATGGGTTCTAATAGCCTACCCTATTGCCATTGGTCTCTCTGAATGCCCTAAAAAGGTCCTGCGAGAACTTCACTAACTATTAACTCCCTGTACCACCATCTCCAGGACTGTGCCATGACACCATCTGTCTTTAGTTGCTTGAAGCTATGTTGCTCTAGCCTAGATTTACAGTGCAATAAGACTTTGCTGGTGGTTAAAACTCCTGTAGCCGCTATGTGTTACAGGAGGAGGTGTGCAGATACATTTTGCTTAACAAAAGACATCTCTACCTCAGTGTTTTAACTGACCGTCGTGACAAACACCATGAATGGTACATTGAGTTCAGTGGACTACATCTAAAAGCATTTAGGATTTTTAATAAGAGAAGCACAAATAGGAGCCGTGTTAAGTTCACCAACACATCAATCAGTTGTTGGAACACATAGAAAGTACATCCATCTTCAACTTCAAACGATGGCCTTTCTCTTTCTAAACACTTCCACAATTCTAAGACGTTTTTTAATGCTAAAATGAATATGAGAGTAATATGAAAGTTAAAAGCCATATGGTAAGATAGAGATATAGATGTTGATAAGTACAGTATATCAAATTAGTGTTTGAGGGGCCTAAATTATTTGCTATATTGTCATTCAACTGATGTAAGTGATGAAATGTCAAGGATTATGTAAAATTCTACCACTGAAGAGATTTGGCTCCACTCTCAATCTCAATCTCGACCGCAATGCTCGTTAAGCTCTGTCGTGTGGAGCCGTAACACCAATTTAGGCAATACTAAAAGCAGTGTTTATCtgtttctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacactcccttaTGACGCTGCTGACGAGGTTCAGCATTGTAAATATTGCATGTGTAAGGTTTTAAAAGTCTCCTCTCAAAGGTTGAATGTGTTTAGTGTATAGAATGGTCGTTGTATTGTACTTGATGATATAAAAAAGCTAATCTAATTTCTCACCTGTGCAAAGCCTACATGCTGATTattgaatatactgtatacatacaaACTAATCTTCACTAACTTATAAAATACAACTTGAACAACTGAAAATCGTAAACACAACTGAATAAGTGCATATTTTTCCGTGTCACGGATCTTCGAATAGATCTCTAAAATATTTTGATTGGATTAACTTTTATTAGTACTATTTCAACCCTATGATGATAACACTCACAGTATAACACCATTACataacttatatatatatatatatatttaaaaaatacagaaTGATCTATGTCACTTTAAAGATAAAGACGTTTATTGCAGCATGTCCACATGATCTCCTCAAagacagtattattattattcatatttttctgCTTTTATAaaagctgtctgtgtgtgtttggaggattGATCAGTCATACTGTTATCTTCATCctaacgtgtatgtgtgtgtgcgtgtgtgtgtgcgtgcgtgcgtgcgtgtgattgtacctgtgtgtgtgattgtacctatgtgtgtgtgtgtgattgtacctgtgtgtgtgattgtacctgtgtgtgttgtgcgtgCCCGTGTTGTGTGCATGCCTGCGTGCGTGTGACACATCATTTTGTATCTGTGTCTAGGTATAAGCCTCTAGCCTATGTGTGTGCAATGAAAAGAAAATCACAACTTCAGCTGTATGTCGACTTCACATATCCATGCTTAGAAATGATTGTCCTCAATGATCTGCTTATCATCTAACATTTGTTTAGAAACCGGTCTGTGTTTGTCCAGACTCAGTATGTGGTTAACATCACACAAACCTGCACCTCTGAGGTGCTCTACACCAGATGACTCTCATCTTTGATTTAGTGCCTCAAATATGAAATCAAATATTCAATGGCTAGTCAGCCTATATTCTATAAATACACTCCAAGAGGCACCGTTTGGTTTATATGATGTAGGGTGGTCTCAGGCTAAACCGCGGTAAAGTACTATATGCAGACCTGACTACCTTATAGGTCTACTGTACTGCATATATAGACATAACACAGTCAGGAGATACAGAATATTGTAGTCAGGACAGGAAGTGTTTCATATAAAGCACTCAGACACTCAGTCATGATTGGAAGAGTGATAAATTACCTAGTTGCTTGCCATTTGGTTGTCGGGGTTTATTTGATTGTGCATTAGCATGAGATGGATAACATCATGTTGAAGTGTATTGTGTAACTTGGTGAGACAGTAACTGCTGTTCATCTTGGGAATTCAGTGGCACTATTTGTATGTAAACAGCAGGTTGAATTAAAAATGGATGCAAAAGCCTCAAACAGTATTTGAGACCTAGCCCTCCTGAAGTGGAACTGAGATGTGCATGTGGATGAATTTGACATGTTTTATACCACTACTGCATTATAGCGCTTCCCAAAAGAGGGGGTAATGTAACAAACCTACCCTATTTGGGATGGTTGGTTAGTGTCTGGGTCTTGGAACCAGAAGGTTGTGGATTCAATTCCCTCCCTGGCTGGGACAGACCTCCCCAAATTCACACCAGTGTTCTCATTGGCGTTCCTTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265672 lncRNA upstream 46711 19774317 ~ 19775179 (+) True G232354
TU265673 lncRNA upstream 56721 19762720 ~ 19765169 (+) False G232355
TU265674 lncRNA upstream 56721 19762720 ~ 19765169 (+) True G232355
TU265657 lncRNA upstream 59572 19758606 ~ 19762318 (+) True LOC110503829
TU265636 lncRNA upstream 186833 19634692 ~ 19635057 (+) True G232333
TU265735 lncRNA downstream 6509 19850960 ~ 19851271 (+) True G232414
TU265736 lncRNA downstream 7346 19851797 ~ 19852031 (+) True G232415
TU265667 lncRNA downstream 8262 19852713 ~ 19857677 (+) True LOC110512558
TU265663 lncRNA downstream 18857 19863308 ~ 19863877 (+) True LOC110512626
TU265645 lncRNA downstream 53991 19898442 ~ 19905535 (+) False G232341
XM_036971287.1 mRNA upstream 2429 19802986 ~ 19819461 (+) False LOC110512494
XM_036971312.1 mRNA upstream 2429 19802986 ~ 19819461 (+) False LOC110512494
XM_036971304.1 mRNA upstream 2429 19803057 ~ 19819461 (+) False LOC110512494
XM_036971297.1 mRNA upstream 2429 19803130 ~ 19819461 (+) True LOC110512494
XM_036964138.1 mRNA upstream 19981 19801239 ~ 19801909 (+) True LOC110503837
XM_021592869.2 mRNA downstream 8170 19852621 ~ 19854181 (+) False LOC110512558
XM_021592877.2 mRNA downstream 8171 19852622 ~ 19857615 (+) False LOC110512558
XM_021592879.2 mRNA downstream 8171 19852622 ~ 19857615 (+) False LOC110512558
XM_021592870.2 mRNA downstream 8187 19852638 ~ 19854181 (+) False LOC110512558
XM_036971356.1 mRNA downstream 8217 19852668 ~ 19857615 (+) False LOC110512558
TU265246 other upstream 587595 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 969908 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1235049 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1525785 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 3022958 16794699 ~ 16798932 (+) True LOC100653482
TU266948 other downstream 714325 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 763842 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1419624 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1442275 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 2173143 22017594 ~ 22019984 (+) True kiaa0319

Expression Profile