RNA id: XM_021592870.2



Basic Information


Item Value
RNA id XM_021592870.2
length 839
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110512558
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19852621 ~ 19857677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAATGGCCTCACACGCCAGTACAGTAGATGGCGGTATACGCGAACTGACAACCAAATCCGAACGAAGAAGAAGAACAGACGTAAACAAAGAGCACGTCGTACATATTCATTCAAACGAGAGGTCCACTGACGGTTCAACCACAGCGTCAGAAATGCCGATATGGAGGTGGACTACAAGCAGAACTACACAAATCTCAAACGCAAATTGAAATTCATGGTTTATGAGCAGGAGTGTTTTCAGGAAGAGCTCAGAAGATCCCAGAAGAAGCTGCTCAGAGTGTCCAGAGATAAAAGTTTTCTGTTGGACCGATTGTTACAATACGAGCGGGTGGACGAGGACTCCTCAGATTCTGATGCCACTGCCTCTTCTGAGAACagcgaaggagagggagagagacggaggaaagAAGTGGGGATGCAGCATGCCAGCAACACAGACAATATTTCAAATTGCACTCTTTCTATTACTGCACTCTCTCCATCTTTGCCATTCTCACTATCTCACTAtttaagaacagatatagcccttggttcaccccagatctgactgcccttgaccatcacaaaaacatcctgtggcgttctgcattagcatcgaatagcccccgcgacaagcaacttttcagggaagtcaggaaccaatatactcagtcagttaggaaagctaaggctagcagAAATTTGAATCCTGTAGCACAGTGTCCCAAAAAGTTtttggacactgtaaagtccatggagaataagagcacatcctcccagctgcccactgcactgaggctaggaaacactgtcaccactgataaatctacgataatcgatactttcaataagcatttttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU265736 lncRNA upstream 607 19851797 ~ 19852031 (+) True G232415
TU265735 lncRNA upstream 1367 19850960 ~ 19851271 (+) True G232414
TU265734 lncRNA upstream 18161 19833042 ~ 19834477 (+) True G232413
TU265672 lncRNA upstream 77459 19774317 ~ 19775179 (+) True G232354
TU265674 lncRNA upstream 87469 19762720 ~ 19765169 (+) True G232355
TU265663 lncRNA downstream 9127 19863308 ~ 19863877 (+) True LOC110512626
TU265645 lncRNA downstream 44261 19898442 ~ 19905535 (+) False G232341
TU265646 lncRNA downstream 44261 19898442 ~ 19905535 (+) False G232341
TU265647 lncRNA downstream 44261 19898442 ~ 19905535 (+) True G232341
TU265778 lncRNA downstream 111552 19965733 ~ 19966496 (+) True G232448
XM_036971328.1 mRNA upstream 8187 19821356 ~ 19844451 (+) False LOC110512505
XM_036971320.1 mRNA upstream 8187 19821890 ~ 19844451 (+) False LOC110512505
XM_036971312.1 mRNA upstream 33177 19802986 ~ 19819461 (+) False LOC110512494
XM_021592900.2 mRNA downstream 4799 19858980 ~ 19863882 (+) False LOC110512626
LOC110512599 mRNA downstream 9794 19863975 ~ 19877144 (+) True LOC110512599
XM_036971395.1 mRNA downstream 75895 19930076 ~ 19997913 (+) False LOC110512638
XR_005041340.1 mRNA downstream 75895 19930076 ~ 20013968 (+) False LOC110512638
XM_036971406.1 mRNA downstream 75899 19930080 ~ 20016410 (+) True LOC110512638
TU265650 other upstream 7986 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 618343 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 1000656 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1265797 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1556533 18295354 ~ 18296105 (+) True G230916
TU266948 other downstream 704595 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 754112 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1409894 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1432545 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 2163413 22017594 ~ 22019984 (+) True kiaa0319

Expression Profile