RNA id: TU265663


Basic Information

Item Value
RNA id TU265663
length 570
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC110512626
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19858980 ~ 19863882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGAGGTTGGCAGGAGGGCTAGTAGTAGGGAGCACGGAAACGGTTGTGGAGAATGTGATGGAGGTCTTTGGGCAGGACCAGAACTGTGGATGGTTTGGGTCTACAGAGAATGTTCATCAATAACATTGCAGATTTATTGCAAACCTTGAAAATTGTGTATCTTGTTCTTATAAAGTATGTAAATATGCACCAGATAGCAAGAGATAATTGATGGGTACACCGCAATGCCAATGCCTCTAGCTAAGCTGTATTAACATAAATGCATAGTTAGGCACAcaacacattttcattttttttgttgctccgTAAAGTAGACGacttctacttctactacttcTTAGTTGTAAAGAAGCAGGATCCCAAAAGACTAATGCTGAGATGAATGGTGTATATGTCAGAAAGTGAAGCTGGGTAGCCCTATGGGTGTGCTGGCCATTTGATCAATTACAATATGGTATTATTTTGGGGAAACATGCTTTGACTGTGTGAGTTCATATGGTAATAGGTGTTAGAATGTATGTTACTTTATGAACTATATGCTTGCTTGATTAAAAAGGATAATTGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265667 lncRNA upstream 5631 19852713 ~ 19857677 (+) True LOC110512558
TU265736 lncRNA upstream 11277 19851797 ~ 19852031 (+) True G232415
TU265735 lncRNA upstream 12037 19850960 ~ 19851271 (+) True G232414
TU265734 lncRNA upstream 28831 19833042 ~ 19834477 (+) True G232413
TU265672 lncRNA upstream 88129 19774317 ~ 19775179 (+) True G232354
TU265645 lncRNA downstream 34565 19898442 ~ 19905535 (+) False G232341
TU265646 lncRNA downstream 34565 19898442 ~ 19905535 (+) False G232341
TU265647 lncRNA downstream 34565 19898442 ~ 19905535 (+) True G232341
TU265778 lncRNA downstream 101856 19965733 ~ 19966496 (+) True G232448
TU265850 lncRNA downstream 214767 20078644 ~ 20080490 (+) True G232520
XM_021592877.2 mRNA upstream 5693 19852622 ~ 19857615 (+) False LOC110512558
XM_021592879.2 mRNA upstream 5693 19852622 ~ 19857615 (+) False LOC110512558
XM_036971356.1 mRNA upstream 5693 19852668 ~ 19857615 (+) False LOC110512558
XM_021592869.2 mRNA upstream 9127 19852621 ~ 19854181 (+) False LOC110512558
XM_021592870.2 mRNA upstream 9127 19852638 ~ 19854181 (+) False LOC110512558
LOC110512599 mRNA downstream 98 19863975 ~ 19877144 (+) True LOC110512599
XM_036971395.1 mRNA downstream 66199 19930076 ~ 19997913 (+) False LOC110512638
XR_005041340.1 mRNA downstream 66199 19930076 ~ 20013968 (+) False LOC110512638
XM_036971406.1 mRNA downstream 66203 19930080 ~ 20016410 (+) True LOC110512638
XM_036971442.1 mRNA downstream 228198 20092075 ~ 20225639 (+) False LOC110512678
TU265650 other upstream 18656 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 629013 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 1011326 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1276467 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1567203 18295354 ~ 18296105 (+) True G230916
TU266948 other downstream 694899 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 744416 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1400198 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1422849 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 2153717 22017594 ~ 22019984 (+) True kiaa0319

Expression Profile