RNA id: LOC110512599


Basic Information

Item Value
RNA id LOC110512599
length 4176
RNA type mRNA
GC content 0.53
exon number 30
gene id LOC110512599
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19863975 ~ 19877144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAATTGGTCTGACTGAGAGTATGGACAAatgtcattgtcaatttggaaaaGGCATTTTTACAGGCCGCCTTGATGTGGCAGAAATGAATCTGACCAAAGCGTCCTTCGAACCAAACATGAGCGCAACATTGCGTAAGACGGCCGACTACTTACACTGCTTATCTGGAACTCATGAGTTGACGTCTCTTTCTTATTCATTCAAAGGGATGGCTTCGCTCTACATCTCCCCCCACCCTGATGACTTCAGGAGCCTCATGGCCCTGGTCGCTGCAGAGTTCTGCCCCTCTCGGCCCTGCACACTCATAGAGGACCCTCCTGCCTCCCTGGCCCTGTGCTCTCGCCCCAGCCTGGTGCTGGGCTCTGGGGGAGGTGAGGTGCTCTCTGGGGCCATTGCTGTTGCATGGTACCTAGCCTCTCAGGGGAAGATGATAGGGTCGAATGCTAAGCAGGAGAGCCAGGTGTGGCAGTGGCTCAGCTTTGCAGACAATGAGCTGACTCCTGTGTCCTGTGCGTGGTGTTCCTACTGCTGGGGGTGATGGGAGTGGATAAGAAGCTTCAGCAGAGTTCTCATGCTGAGATGATGCACGTGCTAAACGTTCTAGATAAGAACCTGGAGTCTAGAACATTCCTGGTGGGAAACAGCCTCACTCTGGCCGACATCGCTGTGGCAACAGCAGCACTCCTGCCCTTCAAATACGCCTTGGAGCCATCCAACAGGAGAGCCCTGACGAACGTGACCAGGTGGTTTCTGACCTGTGTCAACCAGTCACAGTTTGTGAATGTCCTGGGACAGATCTCTCTGTGTGAGAAGATGGTGCCCGTCACACCCAGACCCAGCGTTGCTCCTGTTCCTGCTGCTAATGCTAATCCAACTGATGATGCCAACGCTGTCAATGGCAAACCAAAGACAGAAGCTCAGCTGAAGAAGGAGGCTAAAAGCAGAGAGAAGCTGGAGAAGTTCCAAcagaagaagaagatggaggagaagaaaaaGCAAGAAAAGAAACTGGCTCCCCCGACAGAGAAAAAGGCCAAACCAGAGAAGAAGGACCTGGGAGTGATCTCATACGACGTCCCCACCCCTCCTGGAGAGAAAAAAGATGTCCTGAGCCCCCTGCCAGACTCGTACAGTCCTCAGTACGTGGAGGCAGCCTGGTACTCCTGGTGGGAGAAGCAGGGATACTTCAAACCTGAGTACGGGCGGAAGAGTATCAGTGAGCCGAATCCCCGTGGAGTGTTCATGATGTGTATCCCTCCGCCCAATGTGACGGGATCTCTTCACTTAGGCCATGCCCTAACCAATGCCATCCAGGACTGTCTGACCAGATGgcATCGTATGCGTGGCGAGACGACCCTGTGGAACCCAGGCTGTGACCACGCGGGCATCGCCACCCAGGTGGTGGTGGAGAAAAAACTGATGAGGGAGAGGGGCATGAGCCGTCACGACCTGGGGAGAGACCAGTTCATCCAAGAGGTCTGGAAGTGGAAGAACgaGAAGGGAGACCGTATCTACCACCAGCTGAAGAAGCTGGGTTCCTCTCTGGACTGGGACAGAGCCTGCTTCACCATGGACCCTAAACTGTCCAATGCAGTCCAGGAGGCGTTCATTCGTCTGCATGAGGACGGCGTGATCTACAGGAGCAAGAGGCTGGTCAACTGGTCCTGCACCCTCAACTCTCCCATCTCGGATATAGAGGTGGATAAGAAGGAGCTGACTGGCAGGACTCTGCTGCAAGGACAAAGTGGAGTTTGGAGTACTGGTCTCCTTCTCCTACAAGATAGAGGTATCAgATGAGGAGGTGATTGTGGCGACCACTCGTATAGAGACCATGCTGGGAGATTCTGCTGTGGCCGTCCACCCTGCCGACCCCAGATACCAGCACCTTAAAGGGAAGGTGGTGCTTCATCCCTTCTGTGACAGGATGATGCCCATTGTGTTTGAGTTTGTGGACATCAACTTTGGAACAGgtgCTGTGAAGATCACCCCAGCCCATGACCATAATGATTATGAGGTTGGAAACAGACACAACCTGGCCTTCATCAACATCCTGGATGAGAACGGCCTGCTCATCAACGTGCCGGCTCCATTCTTGggTATGAAACGTTTCGAAGCAAGGAAGGCTGTGCTACAGGCTCTGAAGGACAGAGGCCAGTTCAAGGAGTCCAAAGACAACCCCATGGTGGTGCCTGTCTGCAGTCGTTCTAAGGACATAGTGGAGCCCCTGCTGAAGCCTCAGTGGTATGTGGACTGTGCTGACATGGGCAAGCAGGCAGCTGACTCGGTCCGGGAGGGAAGACTCAAAATCATCCCAGACCACCACCATAAGACCTGGTTCAACTGGTTGGACAACATCAGggaCTGGTGTATCTCTCGTCAGCTGTGGTGGGGTCACAGGATCCCAGCCTACTTTGTCACTGTGAACGACCCTTCAGTCACACCAGGAGAGGACATGGATGGTCATTACTGGGTGagtgggaggacagaggaggacgCCAGAGATAAAGCTGCCAAGCGCTTCAACGTCTCCACTGACAAGGTCACCCTCAGACAGGATGAGGATGTCCTGGATACATGGTTCTCCTCTGGTATTTTCCCCTTCTCCATCTTCGGCTGGCCCAACGagacCCAGGACCTGAGTGTGTTCTATCCAGGCAGCCTGCTGGAGACAGGTCATGACATCCTGTTCTTCTGGGTGGCCCGCATGGTGATGATGGGCCTCAAACTCACCGGCAAGCTGCCCTTCAAAGAAGTGTACCTCCATGCGGTGGTGAGGGACGCCCACGGGAGGAAGATGAGCAAATCTCTGGGGAACGTCATCGACCCCCTGGACGTCATCACAGGCATCTCTCTGGAGggtcTGTACGCCCAGCTGCAGGACAGTAATCTGGACCCAGTAGAGGTAGAGAAGGCCAAGCAGGGACAGCAGTCTGACTACCCCACTGGTATCCCAGAGTGTGGCACAGATGCCCTCCGCTTCGCCCTGTGTGCCTACACCAGCCAAGGCAGGGACATTGACATGGATGTGAATCGTATCCTTGGTTACCGTAATTTCTGTAACAAGCTGTGGAATGCTGTGAAGTTTGCCATGAGAACGCTGGGAGGCAACTTTGTTCCTTCAGAGAAAGCCCAGCTGTGTGGGGAGGAGAGCGTGTCAGACCGGTGGATTCTGTCCCGTCGTGGGTCTGTGTAATGCAGGGTTCCAGGCCTACGACTTCCCAGCTATCACCACAGCCATCTACAACTTCTGGCTCTACGAGCTCTGTGACATCTATCTGGAGAGTGTGAAGCCAGTGGGTCTCAGAGCCAGGCTGTCGTCTGCAGACAGACCCTGTTCACCGGCCTGTGTCTCCTAGCTCCCATAATGCCCTTCGTAGGCGAGGAGCTCTACCAGAGGTTGCCACGGCGACGATCCCAGGATGACCACGCTAGTATCCATGTCATGCCCTACCCTGAGACTGAGAAGTTCTGCTGGCATAGTGAGGACGTGGACCGTCAGATGGAGTTTGTGATGACCGTACTCAGGGCCGACTACAATCTGACCAAGACACATGCCGATTGCTACCTCCAGTGTATAGACAGTGAGACGATGTCTCTGGTGGAGCAGTACAGTCTGCAGATCCAGACCCTGTCTCTATCCCAGACCATCCAGCCCGTCCCAGCCACCGGGGCTGTGCTGTGGCCATTGCCTCCGACAGGTGCACCGTCCACCTCATGCTCAAGGTTCTGATAGACTTGGAGAAGGAGGTGGCCAAGCTGACTATGAAGAAGAGTGACTACAAGGAGAAGGTGCCTGTTAAAGTACAGGATCTGGATGCTGAGAAGctgcgacagagccagACGGAGCAACGGAAGCCATAGACAACTTCAAAAGAATGGTGTAACCTCTCTCCGTCCCCTTTTACAACATTTCTTAAaatagtgagctccaaaagtattgtgaCAGTGacttttgttttggctctgtactccagcacattggatttgaaatgatacaatgacaacAGGTTAAAGTGCAGACATTTAGATTTAATTTGAAGGTATTTTTATCCATATCGGGTGAATGCCACCATGATTACGAATGAGAAATTTAGACATGACTTGTGCCTAACTTATCATTATACACAATCATGGTAGAATCCATATTAatgttctattcttatttacaataagtgAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265663 lncRNA upstream 98 19863308 ~ 19863877 (+) True LOC110512626
TU265667 lncRNA upstream 6298 19852713 ~ 19857677 (+) True LOC110512558
TU265736 lncRNA upstream 11944 19851797 ~ 19852031 (+) True G232415
TU265735 lncRNA upstream 12704 19850960 ~ 19851271 (+) True G232414
TU265734 lncRNA upstream 29498 19833042 ~ 19834477 (+) True G232413
TU265645 lncRNA downstream 21298 19898442 ~ 19905535 (+) False G232341
TU265646 lncRNA downstream 21298 19898442 ~ 19905535 (+) False G232341
TU265647 lncRNA downstream 21298 19898442 ~ 19905535 (+) True G232341
TU265778 lncRNA downstream 88589 19965733 ~ 19966496 (+) True G232448
TU265850 lncRNA downstream 201500 20078644 ~ 20080490 (+) True G232520
XM_021592900.2 mRNA upstream 93 19858980 ~ 19863882 (+) False LOC110512626
XM_021592877.2 mRNA upstream 6360 19852622 ~ 19857615 (+) False LOC110512558
XM_021592879.2 mRNA upstream 6360 19852622 ~ 19857615 (+) False LOC110512558
XM_036971356.1 mRNA upstream 6360 19852668 ~ 19857615 (+) False LOC110512558
XM_021592869.2 mRNA upstream 9794 19852621 ~ 19854181 (+) False LOC110512558
XM_036971395.1 mRNA downstream 52932 19930076 ~ 19997913 (+) False LOC110512638
XR_005041340.1 mRNA downstream 52932 19930076 ~ 20013968 (+) False LOC110512638
XM_036971406.1 mRNA downstream 52936 19930080 ~ 20016410 (+) True LOC110512638
XM_036971442.1 mRNA downstream 214931 20092075 ~ 20225639 (+) False LOC110512678
XM_036971423.1 mRNA downstream 214937 20092081 ~ 20232416 (+) False LOC110512678
TU265650 other upstream 19323 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 629680 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 1011993 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1277134 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1567870 18295354 ~ 18296105 (+) True G230916
TU266948 other downstream 681632 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 731149 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1386931 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1409582 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 2140450 22017594 ~ 22019984 (+) True kiaa0319

Expression Profile