RNA id: XM_021592895.2



Basic Information


Item Value
RNA id XM_021592895.2
length 3310
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110512609
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19877497 ~ 19895848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGATACCGTGCTTGTGTTTGTGACCGACCCAGGAAGAGATAGGAATGTAACTTTGGTCGACGCTAGCACTAGTTCGCGCTCCGGTCAGGAAGTGTTATTGAAACTGCTGTCAGTCACTGAATGACAGCGGTGACAATATGAATGTGTATGCATAGTTAACACATTTGGGAATGTTCAGCTAGATACCAAGAGAATCAAGTATAATGGCTATCTTTGCGTTGTTGCAGGGATGGACTTATCAACCCAAGAGCCTGGAGAAACACACTGACAGCATCCTCGGATGgGCGTCAGCTTTGTGGTCTCTGTCATACTAcagctcccctctcctcctctgctacCTTTACAGAaaagggtaCATCTGCAGCAGTAAGCTGgtcccagtcagtcagtatgtggGAACAGTAATGGTTTGTCTGCTGGGAGTTGCCTGTCTGAGAGgttgGGGACGGTGGAGGAACTCGGAGTATCAACAGTTCATCTCcattctggaggaaaccaggaaGAACCACACGCCTAGCAACAAGAAAAAACTGGCCTGCTATGATTTTGACTTCTCTCACTGGCCGGCAGACTTCAGCTGGGAAGAAGTTAGCAATccGAAGCTGCTGTCCAAGACAGGAGTGTCTCTACTGAAGCCAGAGCCCAAACTGAGAGGGGCAGCAGACAGCGTGCTCAACTCTTTACGCACTCTACCATGCCACATCGTCAGtTTTCTGATTGCCCACTCATTTGGAAGGAGGATGCTGTACCCTGGGTCTGTATTCCTACTGCAAAGGGCTATGAGACCCATGCTACAACAGGGCCAGGCTAGACTTATAGAAGAGTGTGAGGGCCAGAGGAACAAGCTGGTGGCGTGTGATGGGAATGAGATTGATACCATGTTTGTGGACCGCAGGAGAGACGAAGGACAGCATGGACAGACTCTGGTGATCTGCTGTGAGGGGAACGCAGGCTTCTATGAGGTGGGCTGTATGAACACTCCATTGGAAGGTGGATACTCAGTGCTTGGCTGGAACCACCCTGGCTTTGCAGGTAGCACGGGCGTACCGTTCCCCCAGAACGAGGCCAATGCCATGGATGTAGTGATCCAGTTTGCAGTGCACAAGCTGGGCTTCCAGCTCAGTGAAATAGTGGTGTATGCCTGGTCCATAGGGGGATTCACAGCCAGTTGGGCGGTGATGTCCTATCCAGAGATCCAAGCGCTGGTGTTGGATGCATCCTTTGATGACCTGCTGCCTCTGGCCCTCAAGGTCATGCCCGACAGCTGGAGGCCGCTGGtgacacacacagtcaggcaGTACATGAACCTCAACAGTGCAGATCAGCTCTGCAAGTACCAGGGACCAGTGCTTCTGATCAGAAGAACCAAAGATGAGATCATTACCACCACGGGTCCAGAAGACATCATGTCCAACAGAGGAAACAACCTCCTGCTCAAACTTCTGCAGTTCAGGTACCCCCAGGTGATGACAGATGATGGAGTCAGGGCCATCAGAGCATGGCTGGCAGCCTCCAACCACGTAGAAGAGGCAGCGGTGTACAGTAGCTATGAGGTGGATGATGACTGGTGTGTGTCTGTTCTGCAGTCGTATAAGACGGAGAGAGATGTTTTCTTCCCCTGGAGCGTTGGTGAGGACATGACACTGGAGGGAAGACGGCAACTGGCTCTTTTCCTGGCACGGAAGTACATGCGGAACTTCGACTCAACTCACTGCACTCCTCTCCCCTACTCTGAATTCACTGCCCCTTGGAGACTGTAGAAAGAGGGTTGAAGGATGGATAGAAACGAGAAGCAAAGAGCCTGGCGGGGACCAACCAATCAGAGGTTTACAGCGCATGGATTGAATGTATCTATGGGAGGTGTACAAGGCAGCTAGACCCAGTCGGTATTGGAATGTTGCGACCCTGCCCACCTGGCTCATAGCAAAACCTTGGCATTTGTCTACTTGTTTTAATCAATTACAAAATGTACATGTCTAAAGATTACTGCTCCCTAGCAAAACGTAATATTGCCTCATGCCCCTTTATGATGCTAGCGTCCGACCGGAACATCAAGCTAGTCAAGACCAACGCTATACAGCTACAAATAGTGAGTGGAGTTCCAAACGAACTGTGCTAAACAAGTTAAGTCTTACCTGTGATAGTGCTTTCCCACGCCaaatagcctgaagccacagggctcttccTCGACATGGGAGAATTGCGAACAGTAGGTTGTGATTTGACCTGGCTACATGTACAATTGAACACAGCAGCTTTTTAGCATGTTTTATTTCtgtacaaaacaaaaataaacaaagttGGCTCTTTTACAATGTGGGCGTGGTCTAAGGGAATTCCTTATCGTCTGAGTATAATACCCTGACTTCACCGCTCGCGTCGCAAAATAAATCTAGagatctatattattcaattgtTGCCGAGAAGTTACACAACAGGACCCAAACTGTCTGCCATCGtgcataaatatatatttaagcCTAGAAGGAGAGATGACTCGAAACGATTCTATTGACCGTTTTGTGTGGATTAGTTGTCAAGGACCATTTCAGGTCAAATGTTTATGAATTGCcattaatgcttttcgacctgtccccaaattaatgtaattggttgtttgttttgatattttaacctgtgtgtcgtgatcgcgtttgtggggggacaaaataaatgtatgcatgtTGGCGCACTCATGCagctggtttgggttccgtgttgcAATGGCTTTGTTCATATTTATAAACTGGGgggttccagccctgaatgctgatcggctgatagccgtggtatatcagaccatatactacgtttatttttactgctctaattacgttgggtGTTGTGATATGGCcaataccacagctaagggctgtatcccgGAACTCTGCGTTGCATCGTACAAAAGAACAGCCCCAAAccgtataccacaccccctcaggccttattgcttaaatatacactGCCGTCCTCGAGAACTAGATATTTAAAATGCCTCCCATGAAGTAACTATTgattagatttaaaaaaagtcTCTATCCTATTGCCTTTGACTACACTACTACAAGGAAGGAAAGATGCATCTTAAAGGAATGAGgtcttctctccctctggctGCATTTAAAAAAGAGTTATTCCAAATAAATTGTCTTTGATAGCCTCAGATTAAGCCTAGACACACAGATCTACTTTTTACAAATATAGCCAGGCCATCCTCACTTTAAAGCGCTACATTTTGTTGTTCACTCATTATGAACAAAGCTGTATCCTGATAATGCTCAataaaatgttgacattttattTATGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU266480 lncRNA downstream 5268 19871266 ~ 19872229 (-) True G233096
TU266444 lncRNA downstream 13615 19863298 ~ 19863882 (-) True G233064
TU266473 lncRNA downstream 25051 19852232 ~ 19852446 (-) True G233090
TU266441 lncRNA downstream 32847 19827342 ~ 19844650 (-) False LOC110512516
TU266442 lncRNA downstream 32847 19839143 ~ 19844650 (-) True LOC110512516
TU266487 lncRNA upstream 2765 19898441 ~ 19905535 (-) False G233098
TU266486 lncRNA upstream 5410 19901086 ~ 19920613 (-) True G233098
TU266528 lncRNA upstream 66057 19961733 ~ 19997877 (-) False G233136
TU266529 lncRNA upstream 97009 19992685 ~ 19997877 (-) True G233136
TU266553 lncRNA upstream 119550 20015226 ~ 20018106 (-) True LOC110512652
XM_021592863.2 mRNA downstream 26389 19842710 ~ 19851108 (-) False LOC110512516
XM_021592868.2 mRNA downstream 26393 19842710 ~ 19851104 (-) False LOC110512516
XM_021592867.2 mRNA downstream 26398 19842710 ~ 19851099 (-) False LOC110512516
XM_021592859.2 mRNA downstream 26399 19842710 ~ 19851098 (-) False LOC110512516
XM_036971255.1 mRNA downstream 91936 19762376 ~ 19785561 (-) False LOC110512480
XM_036963613.1 mRNA upstream 18844 19914520 ~ 19931740 (-) False g6f-like-b
NM_001195273.1 mRNA upstream 19012 19914688 ~ 19927579 (-) True g6f-like-b
XM_021592906.2 mRNA upstream 118916 20014592 ~ 20018502 (-) False LOC110512652
XM_036971419.1 mRNA upstream 128234 20023910 ~ 20090697 (-) True dnah5
XM_021592920.2 mRNA upstream 366850 20262526 ~ 20270372 (-) True LOC110512703
TU266428 other downstream 120879 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 228868 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 278396 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 595359 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 1275622 18599730 ~ 18601875 (-) True G231652
TU266934 other upstream 656107 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 753095 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 1282921 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 1282921 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 1549812 21445488 ~ 21455716 (-) True LOC110513321

Expression Profile


XM_021592895.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

XM_021592895.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021592895.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.