RNA id: TCONS_00030157


Basic Information

Item Value
RNA id TCONS_00030157
length 417
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_014547
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8121929 ~ 8123442 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATAGATGTGTACACTAGATATTGCAAACAGACCCTGATCATGCGTCAATACAgtcgccatatttgtacagtgctcccaggattAAAATCactcaaccgcactagtcaagactaaagccaatctaAAGATGCTGGACTTAGCGCtgtgtacaggtgtagtaacgagcaaacaaagcaaaaaggcagaacatttcaaagAGTGGTAGACAGCCGTGTTTGAGAAAGCAGCAGGAGCTATCCAACCATCCAGGCCTAAGGAAGCATGTCAGAGTGCTGAGATGCTGCGCATAAGTCAAAgtcgcattttttttttttaaacctgattCCAGTATAAAAATGAACATCAGCTTCGGGCTGTGTGGCTGATCCAATTCTGCCATTCTGTAACCACACACATTTTATGGTGTAATATTTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030156 lncRNA downstream 116879 7987661 ~ 8005050 (-) True XLOC_014545
TCONS_00030155 lncRNA downstream 199366 7883547 ~ 7922563 (-) True XLOC_014544
TCONS_00030154 lncRNA downstream 309364 7801430 ~ 7812565 (-) True XLOC_014541
TCONS_00028769 lncRNA downstream 545825 7574567 ~ 7576104 (-) True XLOC_014537
TCONS_00030153 lncRNA downstream 554619 7564973 ~ 7567310 (-) False XLOC_014538
TCONS_00030158 lncRNA upstream 524091 8647533 ~ 8648772 (-) False XLOC_014550
TCONS_00030159 lncRNA upstream 524091 8647533 ~ 8653122 (-) True XLOC_014550
TCONS_00030160 lncRNA upstream 525682 8649124 ~ 8663238 (-) True XLOC_014551
TCONS_00028781 lncRNA upstream 576312 8699754 ~ 8702063 (-) True XLOC_014552
TCONS_00030161 lncRNA upstream 637323 8760765 ~ 8762375 (-) False XLOC_014554
TCONS_00028775 mRNA downstream 24945 8086491 ~ 8096984 (-) True XLOC_014546
TCONS_00028772 mRNA downstream 289490 7819480 ~ 7832439 (-) False XLOC_014542
TCONS_00028773 mRNA downstream 289490 7819932 ~ 7832439 (-) True XLOC_014542
TCONS_00028771 mRNA downstream 415003 7694487 ~ 7706926 (-) True XLOC_014540
TCONS_00028770 mRNA downstream 430954 7682109 ~ 7690975 (-) True XLOC_014539
TCONS_00028776 mRNA upstream 410547 8533989 ~ 8536474 (-) False XLOC_014548
TCONS_00028777 mRNA upstream 410855 8534297 ~ 8534985 (-) True XLOC_014548
TCONS_00028778 mRNA upstream 459243 8582685 ~ 8604429 (-) False XLOC_014549
TCONS_00028779 mRNA upstream 459476 8582918 ~ 8600383 (-) True XLOC_014549
TCONS_00028780 mRNA upstream 557138 8680580 ~ 8732037 (-) False XLOC_014552
TCONS_00028774 other downstream 296396 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028762 other downstream 653613 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 844336 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 1882940 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 2278724 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028791 other upstream 729098 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 1889056 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028819 other upstream 1999791 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 2115011 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028853 other upstream 2512927 10636369 ~ 10646822 (-) False XLOC_014597